Gene Information

Name : Ping_0234 (Ping_0234)
Accession : YP_941700.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 302809 - 304059 bp
Length : 1251 bp
Strand : +
Note : PFAM: phage integrase family protein; KEGG: son:SO1471 site-specific recombinase, phage integrase family

DNA sequence : 
ATGGCTAAAACCACACCACTTTCAGACACCCAGATTAGATTAACCAAAGCTAGCGATAAGGTAATTACTTTATCTGACGG
TGGCGGCTTACAGCTGAGAATCAAACCAAATGGTTCTAAGCTGTGGCAGTTACGTTTTAATAAGCCGATTGAGAAAAAAC
CTGCATTGATGGGTTTTGGTGCTTATCCCGCTATTTCGTTAGCTAATGCTAGAAAGTTACGCGAGGCTGCCAATGAGTTA
TTAGCACAAGGTATTAATCCCAAAGCTCAGCGTGATAGTGAAATTAAAGAAAAAGAACTAATTCTAAACAATACATTTGA
AATGGTTACGGCTGCTTGGATAAAGCTTAAAGCGTCAGAAGTAAAGCCGGATTCATTAAAAACTATTTCTACCACGCTTA
CTAATCATATCCTGCCTCGTATTGGTAAATGCCCAATAACAGAAATTACAGCGCCTATGGCCATTGAAGCGCTTAGACCG
ATAGAAGCCAAAGGTAACCACGAAGTTATTGCGAGAGCTTGTCAATACCTCAACCAGATCATGCGCTATGCAACTAATCT
TGGCATGATCCATTCCAACCCTTTAACTGGTATTAAAGGGGTATTTATGACTAAAAAGATCACGAACAACCCACATGTAA
AGCCTGAAGAACTTCCACAGTTACTAATGGCTATTGCTACTGCCAATATTAAGAAAATAACACGCAACCTAATTCTGTGG
CAGTTGCATACAATGACTAGACCCGCTGAAACTGCACTAGCACAGTGGAATGAAATAGATTACGAAAATAATTTGTGGAT
TATTCCTGGTGAGCGGATTAAAACAGGTATGACTCATCAGATCCCACTCACTGTACAGACATTGGCGATACTTGAAGCTT
GCAAGGTGATTAGTGGTAATTCGGACTATATTTTCCCTGCAGATAGAAACCCTAATGCTCATGCAAATAAAGCCAGTGCA
AACATGGCATTTAAACGTATGGGCTATCAAGGTAGACAGACAGCACACGGTTTGCGTGGTTTAGCGAGGACAACACTTAG
TGATAAAGGCGTCGCATACGAGCCTTCCGAGGCTTGTTTGTCACATAAAGTAGGTAATTCAGTTAGCCAGTCCTACAATC
ACTCCACGTACCTTAATCAACGAATAAAAATAATGGCGTGGTGGAGTAATTACATTGAAGAAGCTTCTTATGGAAATATT
TCAATGGCAGGCAGCAAAGGCGTGAAGGTTGTTGGGACTGATCAAACATGA

Protein sequence : 
MAKTTPLSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGFGAYPAISLANARKLREAANEL
LAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKASEVKPDSLKTISTTLTNHILPRIGKCPITEITAPMAIEALRP
IEAKGNHEVIARACQYLNQIMRYATNLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLILW
QLHTMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISGNSDYIFPADRNPNAHANKASA
NMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEACLSHKVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEEASYGNI
SMAGSKGVKVVGTDQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 5e-91 49
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 5e-91 49
int AAK20773.1 integrase Not tested VPI Protein 4e-91 49
int AAK20803.1 integrase Not tested VPI Protein 4e-91 49
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-91 49
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-92 47
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-88 45
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-88 45
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-88 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_0234 YP_941700.1 phage integrase family protein VFG1092 Protein 5e-89 45