Gene Information

Name : dnaB (Ping_0192)
Accession : YP_941659.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Unknown
Product : replicative DNA helicase DnaB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 242921 - 244321 bp
Length : 1401 bp
Strand : -
Note : KEGG: ecs:ECs5034 replicative DNA helicase DnaB; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase

DNA sequence :
ATGGCAGGTAAACCTCCCTTTTCGCAGCAGAAACCCAAAATCAATACGCCAATTAAAACTGTCCCCCATTCATTTGAGGC
AGAGCAGGCAATAATTGGTGGTTTATTACTTAATAATGAAGCTTGGAATGATGTTGCCGAGCGGGTTGTTGAACGTGATT
TTTACCATAGAGCACACCGTCAAATTTTTGCAATGATTGAACGGCTGAGCAGTGAAGATATACCGGTTGATTTGGTCACT
CTCTCCGAACATCTTGAAAATAAGAAAGAGCTGGAAGGAGTCGGCGGTATTGCCTACCTTGCAGAGCTGCTGCAAAACAC
CCCCAGTGCAGCTAATATTAACAACTATTCCGATATTGTCCGAGAACGCGCCATTGTTCGCGAATTAATTGGTGTTGCCA
ATGAAATCGCCGAAGCGGGTTATGAGACAGAAGGTCGAGATAGTAATGAATTACTTGATTTTGCTGAAACGAGAGTCTTC
CAAATAGCTGAATCACGCAGCAATAAAAGCGAAGGCCCACAGGCAATTAAAGATATTTTAAAAGCGACTGTGGCAAAAAT
TGATGATTTATGCAAAAACCCGCGCGATGGTATAACCGGTTTATCTTCCGGTTATAATGATTTAGATCAGATGACGACGG
GATTCCAAGCTGGGGATTTAATTATTGTGGCAGCCCGTCCTTCCATGGGCAAAACAACCTTTGCCATGAACCTTGCCGAA
CACGCAGCGTTAAATGCCGACAAACCAACGGTTATTTTTTCACTGGAGATGCCTGCAGAACAGATAATGAACCGTATCCT
CTCCTCCCTTGGGCGAATTGATCAGGGCAAAATACGAACCGGTCAGCTGGATGAAAATGATTGGGCATCACTATCATCGA
CCATGTCTATTCTGCTGCAAAAAGGGAATATGTTTATTGATGATAGTTCTGGCCTCACGCCGACGGAATTACGCTCGCGA
GCGCGTCGTATTGCTCGAGATCATGGTGGTGTTAGTTTAATCATGGTCGATTACCTTCAGCTGATGCGCGTACCTTCATT
AAGTGAAAACCGGACCTTAGAAATATCTGAAATTTCACGTTCATTAAAAGCCCTAGCCAAAGAGCTGCGCTGTCCGGTTA
TTGCCCTTTCACAGCTAAACCGTGGCCTTGAACAACGTGCAGACAAACGCCCCATTAACTCCGACCTGCGTGAGTCTGGT
GCGATTGAGCAGGATGCCGATTTAATTATGTTTATCTATCGGGATGAAATTTATAACGAAGCAAGTGAGCATAAAGGTAT
TGCAGAGATTATTATCGGTAAACAACGTAATGGCCCGATCGGAAAGGTTCGTTTGACCTTCCAGGGCCGTTATTCACGAT
TTGATGAATATACCGGTACAGCTTACCATGGGGAAGATTGA

Protein sequence :
MAGKPPFSQQKPKINTPIKTVPHSFEAEQAIIGGLLLNNEAWNDVAERVVERDFYHRAHRQIFAMIERLSSEDIPVDLVT
LSEHLENKKELEGVGGIAYLAELLQNTPSAANINNYSDIVRERAIVRELIGVANEIAEAGYETEGRDSNELLDFAETRVF
QIAESRSNKSEGPQAIKDILKATVAKIDDLCKNPRDGITGLSSGYNDLDQMTTGFQAGDLIIVAARPSMGKTTFAMNLAE
HAALNADKPTVIFSLEMPAEQIMNRILSSLGRIDQGKIRTGQLDENDWASLSSTMSILLQKGNMFIDDSSGLTPTELRSR
ARRIARDHGGVSLIMVDYLQLMRVPSLSENRTLEISEISRSLKALAKELRCPVIALSQLNRGLEQRADKRPINSDLRESG
AIEQDADLIMFIYRDEIYNEASEHKGIAEIIIGKQRNGPIGKVRLTFQGRYSRFDEYTGTAYHGED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-100 52
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 3e-99 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-99 50
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-99 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 3e-98 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 9e-93 48
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 9e-93 48
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 5e-87 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-82 44