Gene Information

Name : Ping_0012 (Ping_0012)
Accession : YP_941486.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3517
EC number : -
Position : 18217 - 19665 bp
Length : 1449 bp
Strand : +
Note : PFAM: protein of unknown function DUF877; KEGG: pen:PSEEN0524 hypothetical protein

DNA sequence :
ATGGAAGCAATAAAAGAAGAATCATTAGTTGGAAGTATATTAGGTTTAAGCAAGCTTTTAAGTGACCCATATAGTTATGA
TATTGCAAGTCAAGGGATGCAAACGCTGCTCACTCAGGTACTTGAAGAAGATTGTGATTTTGATAATCTAAGAGTAGATA
AACGTTATGTTGAATCTCTTATTGATGAGCTTGATGAAAAACTCAGTAAGCAAATGGATGAAATTATCCATAATAGTGTT
TTTCAAGCACTAGAATCGCCATGGAGAAGTTTAAAACTGCTAACGGATAGAACAGATTTCAAAGAAAATATAAAAATTGA
AATATTATCAGTATCCAAAAATGAGTTACTGGAAGATTTTGAAGATGCGGCTGATATAATTGAAACAGGTCTTTATCGTA
AAGTTTACACCGATGAATTCGGACAATATGGTGGTGATCCCTATGGAGTGATTATTGGAAATTATTATATTTCCCCTTCA
GTCCCCGATATGAATTTACTGAGTCATATGTCCAGTTTAAGTGCTATGACACATGCTCCATTTATAACAAGTGCAAGTGA
AGAATTTTTTGGACTGGAAGATTTTGCAGAATTACCTGAGTTAAAACAATTAGAAGCTATGTTTGAAGGCCCGCAATATT
TATCTTGGCGTAACTTTAGAAGCAGTGATGATGCCAGAAATGTCGGCCTCACTTTACCTCGATTTATGTTAAGGCGAACA
TATGGTGAAAATATTCCAGTAAGTGCTTTTAACTATAAAGAAAGTATTAACAACAAGTCAGAGTACCTATGGGGCAACGC
AGCATTTGCTTATGCAACGCGATTAAATAACAGTTTTGCAAAATATCGTTGGTGTCCAAATATCATCGGTCCGCAATCAG
GTGGTGAAGTCGCTGATTTACCTATTGATATCGTTGATGATAGCGGCACTGATAAAGTTTTTGGACCAGTAGAACTTAAA
GTGTCAGATAGGAAAGAATTTGAATTATCTGAACTTGGTTTTATTCCTTTTACACTCCGAAAAGACTCTGACAGTGCAGT
CTTTTTCTCATCTAATTCAACCCAATTGCCTAAAAAATTCACCAATGATGATGAAGGTAAACAGGCTGAAATTAATTACC
GTTTAGGTACACAACTACCTTACTTATTTATAGTAAACAGGCTGGCTCACTATATTAAGGTATTACAACGCGAAAATTTG
GGTAGTTGGAAGAGTAAAACAGAGCTAGAAACAGAGCTTAATAAATGGATCAGGCAATATGTTGCAGATCAAGATAATCC
TTCCGCAGCAACAAGAAGTCAACGACCACTCAGAAAAGCTGCAATTTCAGTCAGTGACATTGATACTGAAGTAGGTTGGT
ATTCTGTCGGTATGGAAGTGACTCCTCACTTTAAATTTATGGGAGCAAGTTTCACACTCTCTCTAACCAGTATTTTAGAA
CGAGCTTAA

Protein sequence :
MEAIKEESLVGSILGLSKLLSDPYSYDIASQGMQTLLTQVLEEDCDFDNLRVDKRYVESLIDELDEKLSKQMDEIIHNSV
FQALESPWRSLKLLTDRTDFKENIKIEILSVSKNELLEDFEDAADIIETGLYRKVYTDEFGQYGGDPYGVIIGNYYISPS
VPDMNLLSHMSSLSAMTHAPFITSASEEFFGLEDFAELPELKQLEAMFEGPQYLSWRNFRSSDDARNVGLTLPRFMLRRT
YGENIPVSAFNYKESINNKSEYLWGNAAFAYATRLNNSFAKYRWCPNIIGPQSGGEVADLPIDIVDDSGTDKVFGPVELK
VSDRKEFELSELGFIPFTLRKDSDSAVFFSSNSTQLPKKFTNDDEGKQAEINYRLGTQLPYLFIVNRLAHYIKVLQRENL
GSWKSKTELETELNKWIRQYVADQDNPSAATRSQRPLRKAAISVSDIDTEVGWYSVGMEVTPHFKFMGASFTLSLTSILE
RA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 9e-132 52
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 2e-131 51
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 3e-131 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_0012 YP_941486.1 hypothetical protein VFG2093 Protein 1e-140 55
Ping_0012 YP_941486.1 hypothetical protein VFG2475 Protein 8e-137 54