Gene Information

Name : Ping_1228 (Ping_1228)
Accession : YP_942657.1
Strain : Psychromonas ingrahamii 37
Genome accession: NC_008709
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1529371 - 1530027 bp
Length : 657 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VP1734 DNA-binding response regulator

DNA sequence : 
ATGCGTATTTTATTAGTTGAAGATGATGTTATGTTAGGCGAATCCATGGTGGTTTCATTAATTCGTCATGGATACACAGT
CGATTGGCTGCAATTGGGCGCTGCGGTAGAGATGACTTTAAGAACTGAAAATTTTACGGCGATAATCTTAGATTTAACAC
TGCCGGATGCCGACGGTTTAGATATCCTGAGTCAAGTCAGGAAAGCGGGACATAAACTGCCAATCTTAATTTTAACTGCG
CGAGATGATATTGATGACAGAGTTAAAGGTCTTGATGGTGGGGCAGATGATTATTTGCTGAAACCTTTTGCTTTACAAGA
ACTGCTGGCGCGTTTACGGGTTATTGTCAGACGGGTATCGGGTTATGCTGAATCAAAGATTGAACTGCATGGCTTGGTTA
TCTCTTTGGCAAAAAACACCGTTGAGTATCATGGTGCTGCTATAAAATTAACCAATACTGAATTTAAATTACTGACAACC
TTAGTGACCAAAGCAGGTCGAGTATTAAGTAAAGAATATTTACAGCAAACTTTATATGGCTGGGATGAGATGGCGAGCGA
TAACGCGATTGAAGTCTATATACATAATTTACGTAAGAAGATTAACAACCAATTAATTAAAAATATCAGAGGGGTTGGGT
ACATCATTGAAAAATAA

Protein sequence : 
MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGLDILSQVRKAGHKLPILILTA
RDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTT
LVTKAGRVLSKEYLQQTLYGWDEMASDNAIEVYIHNLRKKINNQLIKNIRGVGYIIEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_1228 YP_942657.1 winged helix family two component transcriptional regulator BAC0487 Protein 1e-35 45
Ping_1228 YP_942657.1 winged helix family two component transcriptional regulator BAC0347 Protein 3e-24 41
Ping_1228 YP_942657.1 winged helix family two component transcriptional regulator BAC0083 Protein 4e-26 41
Ping_1228 YP_942657.1 winged helix family two component transcriptional regulator BAC0111 Protein 9e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ping_1228 YP_942657.1 winged helix family two component transcriptional regulator VFG0473 Protein 6e-37 42