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Name : clpB-1 (Ping_1040) Accession : YP_942478.1 Strain : Psychromonas ingrahamii 37 Genome accession: NC_008709 Putative virulence/resistance : Virulence Product : chaperone endopeptidase Clp ATP-binding chain B,ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1311798 - 1314284 bp Length : 2487 bp Strand : + Note : PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: gka:GK0078 ATP-dependent Clp protease ATPase subunit DNA sequence : ATGTCCGATTGGAATAACCCGGCGGCCAAAGGAGCCATGTTACATAATTATGTTCAGAAGAGTACCCAAAAGGTGATTGG CTGTTTGGAGATTGCTTTTGCCGAGTTAGGAAGCTTACGGCTGAATATATTGACGTCCGATTTTTTGCTGGTTGCGTTAC TTTCTCAACCGGACAGCGAAGCGCACAAAATTTTGCAGGAGTTATTGCCAAATGAAGATGATGCTCCATTGCGTATCGTT GGTCAGATAAGGCAAAAATACCCCCCCGCAAGTAACGTCCAGGCAAGGCAAATTTTGGCTTCTCAAGAGATAGTCGAAGT ATTTCGAGTTGCCTACGACGAGGCTAAAGACTTTGGCGATGACTATATTGGTACAGGCACTTTATTTCTTGCTTTTTTTC ATAAGGATGCGGGGCATGTTGCTGATATTTTGAATAATGAAGGTATTCGCGTTGACCAGGCGCGTCAAGCATTAAAGCAT ATTCGACGGGGGCATCAGCTTAATAGTCAAGATGCGGAAGGAAAACCAGATATATTGGATATCTATACTAAAGATCTCAC CGAGATGGCGCGCAAAGGGGAGTTAGATCCTGTTATTGGTCGGGAGGAGGAGATCGAATTGATTATTCAAACCTTGTCCC GGCGTAAGAAAAATAACCCTGCCCTGATTGGTGAACCCGGGGTAGGTAAAACGGTTATTGTCGAAGGTTTGGCACAACGG ATTGTGGCTGCTGATGTGCCCGATAGTCAGCTAAATAAGCGTTTACTTGCGCTGGATATGGGAGAGCTGGTGGCCGGGGC TTCAATGCGCGGTGAATTTGAAGAGCGCTTAAAATCTGTGCGTGATGCCGTTATTGAGGCGGGAGGCAAGGTTATTCTGT TTATTGATGAATTGCATACCGTGGTTGGCGCTAATGCCGGATCCGGTGGTATTGATGCTCCGAGTCTGTTGAAAACCGCG CTGGCTCAGGGAACCCTGCAGGTTATAGGGGCTGATACTTTGGATGAATATCAAAAATATATAGAAACAGATAAAGCCCT TGAGCGGCGCTTTCATCCTATTTTAGTACGGGAGCCGAGTATTGAGGAAACCATTGCTATTTTGCAGGGCGCGGCTCCCC GTTATGAAAAGCACCATGATATTCATTATGCGTTACCAGCATTCGAAGCTGCAGCACGACTTTCTGAGCGTTATATTGCG GATCGCTGTTTACCCGATAAGGCGGTTGACTTGATTGATGAAGCAGGCGCGCGGAAACATCTTCGTCTTACCGCTATTCC TCAAAATTTGCGGGATCTTGAACGTAAGCATCAAGGGTTATTACGCGATAAGACCGGCGCTTTTAATGCGCAAAATTTTG AGCAGGTAGCAGCAACGCAGATGGAGATTTTAAAGAGCGATCAAAAGCTTAAAGAGGCACGCAGTGATTGGCAACAGGGG CGGGCCAAGGAAGATGCGATGGTGACATCGGATGATATTGCCGAAGTAGTAGCACGCTGGACAGGTATTCCCGTTGCGAG AATGGTTGAATCGGAGTCTGAAAAACTGGCCCGAATGGAAGAAAAATTGCATCAGCGGATCGTTGGCCAGGAAGATGCTG TCCGCGCTGTTGCAGATGCCATTCGTCGCAATCGGGCCGGTATTACAAACAGCCGACGTCCTATTGGCTCATTTCTTTTT CTGGGCCCTACTGGTGTCGGGAAAACTGAACTCGCCCGTGCCTTGGCTGCCTTTTTGTTAGATGATGAAACAAGAATAAT TCGTCTTGATATGTCGGAGTATATGGAGAGACATGAAGTCTCTAAAATGATTGGCGCACCACCAGGGTATATCGGTTATG GTGAAGGAGGGCAATTAACAGAACGTGTACGTCATAACCCCTATACAGTGGTATTGCTGGATGAGATGGAGAAAGCTCAC CCGGATGTGTTTAATATGTTACTGCAAATTCTTGAAGATGGGCAACTAACGGATGCTAAAGGGCGTAAAGTTTCCTTTCG CAATACCGTTATTATAGGAACTTCTAATCTGGGCACCGGGTCACTCTCCCCTGACAAGCGTCCGATCGGATTTATTCATT CTGATTCGCTAAACTATAAGGAAACACAAGATTTGGTGATGCACGAAGTTAAGAAGTTCTTTAAACCAGAGTTTCTTAAC CGGCTTGATGACATCATCGTCTTTCATTATTTAGAAAAAGAACATGTCCGTCAGATAGCACAGATGTTTGTCGCTGAATT AGTCGAACGAATGAAACTGAGGGGCATTGTGCTTGAAGTCGATAATGCTGTGATTGATAAACTCTCGGCAGACGGTTTTG ATCCTATTTATGGTGCGCGACCCTTAAGACGTGAAGTGGAGCGTCAAATAGAAAATGTATTAGCAATGAAAGTTGTGCGG AATGAATTCTCAGATAACAGTGTGGTTCAAGTTAAGATGCAGGATAAGGAGATTGTTTTTCTCACCGAGCAGAAGATGAC TAAATAG Protein sequence : MSDWNNPAAKGAMLHNYVQKSTQKVIGCLEIAFAELGSLRLNILTSDFLLVALLSQPDSEAHKILQELLPNEDDAPLRIV GQIRQKYPPASNVQARQILASQEIVEVFRVAYDEAKDFGDDYIGTGTLFLAFFHKDAGHVADILNNEGIRVDQARQALKH IRRGHQLNSQDAEGKPDILDIYTKDLTEMARKGELDPVIGREEEIELIIQTLSRRKKNNPALIGEPGVGKTVIVEGLAQR IVAADVPDSQLNKRLLALDMGELVAGASMRGEFEERLKSVRDAVIEAGGKVILFIDELHTVVGANAGSGGIDAPSLLKTA LAQGTLQVIGADTLDEYQKYIETDKALERRFHPILVREPSIEETIAILQGAAPRYEKHHDIHYALPAFEAAARLSERYIA DRCLPDKAVDLIDEAGARKHLRLTAIPQNLRDLERKHQGLLRDKTGAFNAQNFEQVAATQMEILKSDQKLKEARSDWQQG RAKEDAMVTSDDIAEVVARWTGIPVARMVESESEKLARMEEKLHQRIVGQEDAVRAVADAIRRNRAGITNSRRPIGSFLF LGPTGVGKTELARALAAFLLDDETRIIRLDMSEYMERHEVSKMIGAPPGYIGYGEGGQLTERVRHNPYTVVLLDEMEKAH PDVFNMLLQILEDGQLTDAKGRKVSFRNTVIIGTSNLGTGSLSPDKRPIGFIHSDSLNYKETQDLVMHEVKKFFKPEFLN RLDDIIVFHYLEKEHVRQIAQMFVAELVERMKLRGIVLEVDNAVIDKLSADGFDPIYGARPLRREVERQIENVLAMKVVR NEFSDNSVVQVKMQDKEIVFLTEQKMTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 8e-149 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB-1 | YP_942478.1 | chaperone endopeptidase Clp ATP-binding chain B,ClpB | VFG0079 | Protein | 2e-173 | 47 |
| clpB-1 | YP_942478.1 | chaperone endopeptidase Clp ATP-binding chain B,ClpB | VFG0080 | Protein | 4e-135 | 47 |
