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Name : Ping_0097 (Ping_0097) Accession : YP_941570.1 Strain : Psychromonas ingrahamii 37 Genome accession: NC_008709 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 129387 - 131375 bp Length : 1989 bp Strand : + Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: cps:CPS_4591 general secretion pathway protein D DNA sequence : ATGAATCTTTTCATGATACAAAAAAAATTATCTAAGCAATTAATTTTCAGTTTGTTGGTTTTATTGATTTGTGCGATTAA TGCAGGGCGTGTATCTGCCACTGAATATTCGGCCAGTTTCAAAAATGCGGATATTAATGAGTTTATCAATATCGTTGGTA AAAATTTAAATAAAACTATTATATTAGATCCGTCGGTGCGTGGCAGCATCAATGTACGCAGTTACGATTTGTTAAATGAA AGACAGTATTATCAGTTTTTCTTAAATGTCTTAGAGGTTTATGGCTTCGCTACTGTTGAAATGGAGAATGGTATAGTCAA AGTAGTTAAAGCCAAGGACGCTAAAACAGCTGCTATCCCTGTTGTTGATGATGGCACAACCTATATCGGTGACCAAATGG TGACCCGGGTAGTCCCTGTTACTAACGTTTCCGTGCGTGAGTTAGCCCCTCTATTGCGGCAATTAAATGATAATGCCGGC GGGGGTAATGTGGTGCATTATGACCCTTCCAACGTCTTAATGATCACCGGCCGAGCTGCTGTTGTTAATCGTTTGGTAGA GATTGTTAATCGGGTCGATAAGGCAGGTGATCAGGAAGTTGATATCATTAAACTTAAATATGCCAGCGCGCTGGAGATGG TTAAAATTGTTGATGCGATTCAGGGATCGTCAAGCGGGGCAAAAAATATCAGCTCATCTGTTTTACAGCCTAAATTAGTG GCTGATGAACGTACTAACTCGGTTATTATCAGCGGCGAACCTAAATCGCGATCGCGCATTGTTAAGTTAATTAAATCATT AGATGCTGAACTGTTGAATGAGGGTAATACACAGGTTTTTTACCTTAAATATGCAAGTGCTCAGGAAGTAGTTGATGTAT TAAAAGGGGTTAGTAAAAGTATTGATAGTCCCCAGGGAAATGCGGCAGGCCAATCGGGCTCTGCTCAAGGGGGCCTCAGT ATTGAAGCGCATGAAGGTACTAATGCGATTGTTGTTTCTGCACAACCGGCTCTGATGTCATCATTAACCAGTATTATTCG TCAATTAGATATTCGCCGTGCGCAAGTTTTAGTAGAAGCTATTATTGTCGAGGTTTCTGAAGGTGATGGTATTAATCTTA ACGTTCAATGGGGAACCACCAATGGTGGCACACAATTCCAGGATAGTGCTGTCACGACTGGTAACATTGTAGCGGGTACA CAGGACAATGATGCGGCTATTTCAGCAATAGGCAACATTTCCGGAGGAATCGCCGGTTATATAGGATCCAATTGGGGTGT TGTGCTGCAGGCATTAAGCAGCGCCACAACCTCTAATATATTAGCGACACCGAGCTTAACAACTTTGGATAATCAGGAAG CCAGTTTTATTGTCGGTGATGAAGTACCAGTTTTAACCGGCTCAACTTCCAGCGCAACTAATGATAACCCATTCCAAACC ATTGAACGTAAAGAGATCGGCATTAAATTAAAGGTGACCCCGCAGATTAATGAAGGGGATTCAGTGCAAATGATCATTGA ACAAGAGGTTTCAGATATTAAAAATGATACTTCCGCCGTGGATGTTATTTTTTCGACTCGTTCAGTTAAAACAACGGTAT TAGCAAAGTCAGGTGAAACCATCGTAATTGGTGGTTTGATTGATGAAACTGTCAAAGAGACTGTTCAGAAAGTGCCTTTA TTGGGGGATATTCCTTTGTTGGGATTCCTTTTCAGATCAACTCAAAGTAGCACAGAAAAACGCAATCTAATGATCTTCCT GCGCGCAACCATTATCCGGGATGATCAGACTATGATGAATCTTAGTACGCGGAAATATAGTTTAATTCGAGCTGTTCAGG AAAAACAGCGTGATACTGGTATTAATTTGATGCCTAACGCTACTCCTCCCATCCTGCCTGAATGGGGGCAAAGTTATGAA ATTAATCCGGATCATTTCATCAAGTCAGAAAGTAAAATCAGAAAACCAACAACAGAAGGTGTGAACTAA Protein sequence : MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTIILDPSVRGSINVRSYDLLNE RQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIPVVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAG GGNVVHYDPSNVLMITGRAAVVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKSIDSPQGNAAGQSGSAQGGLS IEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGT QDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPL LGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMNLSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYE INPDHFIKSESKIRKPTTEGVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 4e-132 | 49 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-124 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ping_0097 | YP_941570.1 | general secretion pathway protein D | VFG2047 | Protein | 6e-123 | 47 |
