Gene Information

Name : fliP (azo2726)
Accession : YP_934229.1
Strain : Azoarcus sp. BH72
Genome accession: NC_008702
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3009853 - 3010629 bp
Length : 777 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGCACCCTGAGTTCCACCGCGCGCCGTCGGGCGCGCGCGCCTTTTTCCGCCTGATCCTGCCGCTGGCGCTGCTGCTGGC
GCCCTTCGCGGTCGCCGCCCAGGGCCTGCCGGCGCTCAACAGCACGCCGGGGCCGGGCGGCAGCACCAATTACAGCCTGC
CGGTGCAGACGCTGGCGCTGCTGACGCTGCTGAGCTTCATCCCGGCGCTGGTGCTGATGATGACCAGCTTCACGCGCATC
ATCATCGTGTTCTCGCTACTGCGGCAGGCGATCGGCACCCAGACCTCGCCGCCCAACCAGGTGCTGCTCGGGCTGGCGCT
GTTCCTCACCTTCTTCATCATGGCGCCGGTGGCGGACAAGGTTTACCTGGAAGCCTACCAGCCGATGTCCGAAGGCCGGA
TCAGCTTCGAGCAGGCGCTCGAGCGCGCCACGGTGCCGGTCAAGGCCTTCATGCTGAAGCAGGTGCGCGAGCCCGACCTC
AGCCTGTTCACCGGACTGGCCAAGCATCCGCCGGTGGAGAAAGCCGAAGACCTGCCGATGCGCGTGGTGGTGCCCGCCTT
CGTCACCTCGGAGCTGAAGACCGCGTTCCAGATCGGCTTCATCGTCTTCATCCCCTTCATCATCATCGACATGGTGGTGG
CCTCGGTGCTGATGTCGATGGGGATGATGATGATGTCGCCGGTCATTGTTTCGCTGCCGTTCAAGATCATGCTGTTCGTG
CTGGTCGATGGCTGGACGCTGCTGATCGGCTCGCTGGTGCAGAGCTTCGCCGTCTAG

Protein sequence :
MHPEFHRAPSGARAFFRLILPLALLLAPFAVAAQGLPALNSTPGPGGSTNYSLPVQTLALLTLLSFIPALVLMMTSFTRI
IIVFSLLRQAIGTQTSPPNQVLLGLALFLTFFIMAPVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLKQVREPDL
SLFTGLAKHPPVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIIIDMVVASVLMSMGMMMMSPVIVSLPFKIMLFV
LVDGWTLLIGSLVQSFAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-10 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-10 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-10 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-16 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-17 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-16 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-16 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-16 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-17 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-15 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-08 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-15 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-48 70
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-43 67
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-38 61
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG2016 Protein 7e-35 58
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-14 42
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG0188 Protein 5e-18 42
fliP YP_934229.1 flagellar biosynthesis protein FliP VFG0394 Protein 5e-16 41