|
Name : rplS (Sama_0892) Accession : YP_926769.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 1079662 - 1080015 bp Length : 354 bp Strand : + Note : this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site DNA sequence : ATGAACAACATCATCAAAATGCTCAACGATGAGCAAATGAAAAAAGACGTTCCTGATTTTGGCCCAGGTGATACCGTAGT GGTTCAGGTACGTGTTAAAGAAGGTGACAAAGAGCGTCTGCAGGCGTTCGAAGGCGTTGTAATCGCCAAGCGTAACCGTG GTCTGCACTCTGCTTTCACCGTTCGTAAGATCTCTAACGGTGAAGGTGTGGAACGTGCTTTCCAAACTCACAGCCCTCTG ATTTCCAGCATCGAAGTTAAGCGTCGTGGCCGCGTTCGTCGCGCCAAGCTGTACTATCTGCGTGAGCGTTCAGGTAAGTC TGCACGTATCCGTGAGAAGCTGGCGACCAAGTAA Protein sequence : MNNIIKMLNDEQMKKDVPDFGPGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSAFTVRKISNGEGVERAFQTHSPL ISSIEVKRRGRVRRAKLYYLRERSGKSARIREKLATK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 7e-39 | 76 |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 5e-28 | 59 |
