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Name : Sama_0457 (Sama_0457) Accession : YP_926337.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Virulence Product : MSHA biogenesis protein MshE Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 563253 - 565016 bp Length : 1764 bp Strand : + Note : KEGG: son:SO4109 MSHA biogenesis protein MshE DNA sequence : ATGAAACCAAAACTCAAGATGCGCCTTGGGGATTTACTGGTCTCGGAACAAATCATTGGTGAGGATCAGCTGACCGCTGC ACTTGCGCAGCAAAAGAGCACCGGCCGAAAATTGGGCCGCACCCTGATTGATATGGGATATATCGCAGAAGATCAGCTGC TTAAATTCCTGTCGCAACAGCTGAATATTCCCTATCTCGACATCAGCCGCCGTCCTGTGCCTCCCGCCGTAGTGAACCTG CTGCCAGAAGTTCAGGCCCGCCGCTACCGGGCCCTGGTGATTGAAGATAAGGGGGATGCGGTGGTGGTCGCCATGAGCGA TCCGGCGGATCTGCAGGCACTGGACAACCTTGAAGTACTGCTGGCACCCAAGCGTCTCGATTTGGTGGTCGCTCCCGAGG CCCAGCTGATGCAGGCCTTTGACAACCTGTACCGCCGCACTGAACAAATCGCTCAGATGGCAGGGCAGTTGGAAGAAGAG TATGCCGCAGACGAGGCATTTGACCTTGCCGCGCTGACCGCTGGCGACAGCGACAGTGAAACCACTGTGGTTAAACTGCT GCAATCGATTTTTGAAGACGCAGTGCAGATGCGGGCATCCGACATCCACATTGAACCCGGCGATAAATCGCTGCGCATCC GTCAGCGCGTGGATGGCCACTTGCAGGAAACCATACTAAACGAGGTGACCATAGCCGCGGCGCTCGTGCTGCGTCTCAAG CTGATGGCCGGGTTGGATATCTCCGAAAAACGTTTGCCGCAGGATGGTCGTTTCCATATGGAAGTTAAAGGCCACAAAAT AGACGTGCGTATCTCCACCATGCCGATTTATCACGGCGAGTCTGTGGTGATGCGTCTTCTGGACCAGTCGGCCGGTTTGT TGACCCTGAATGAAACGGGTATGCCGGATGCGATTTTGCAGCGGGTACGCAAACAAATTAAGCGCCCCCACGGCATGTTA TTGGTGACAGGCCCTACGGGTAGCGGCAAAACCACTACTCTCTACGGCATCCTGAGTGAACTCAATACGGCCGATCGCAA GATAATCACGGTTGAAGATCCGGTGGAATATCAGCTGCCACGGATCAATCAGGTGCAGGTTAACCACAAGATAGGTCTCA ACTTCTCCAACGTGCTGCGCACCACATTACGTCAGGACCCCGACATCATCATGGTGGGGGAGATGCGTGACCACGAAACC GTAGAAATCGGCTTGCGGGGCGCGCTGACGGGTCACTTTGTGCTCTCAACCCTGCACACCAACGATGCCGTAACCTCGGC GCTGAGACTTCTGGACATGGGCGCAGCAAGCTACTTGGTGGCCAGTGCACTGCGGGTCATCATTGCCCAGCGATTGGTGC GCCGCGTATGCCAAAATTGCGCCGTGGATTATCAACTGACCAGTCAGGACAAGGCTTGGCTGACCAGTGTCAGCAAAGGA GTGGATTTTTCTCAGGCCCGTTTTCGCATGGGCACTGGCTGCCAAAGCTGTAGTGGCACAGGTTACCGAGGTCGTATTGG TATTTTCGAGCTGCTGGAGCTGGATGAAGCCATGGTGGATGCCATGCGCACCGGCAACCCTCAGGCATTTGCCCAGGCGG CTTACGCCAGCCCTAACTTTACTCCCTTGCTCATCTCGGCACTCAATTACCTTAAGCAGGGCATGACCACGATAGAAGAG GTTGCCAGACTGGTGGAGGATGTCAGCGAAACCCAGATACCACTGTCGCAGGAAATGGCCCAGTTTGATGGTGCAGGAGC CTGA Protein sequence : MKPKLKMRLGDLLVSEQIIGEDQLTAALAQQKSTGRKLGRTLIDMGYIAEDQLLKFLSQQLNIPYLDISRRPVPPAVVNL LPEVQARRYRALVIEDKGDAVVVAMSDPADLQALDNLEVLLAPKRLDLVVAPEAQLMQAFDNLYRRTEQIAQMAGQLEEE YAADEAFDLAALTAGDSDSETTVVKLLQSIFEDAVQMRASDIHIEPGDKSLRIRQRVDGHLQETILNEVTIAAALVLRLK LMAGLDISEKRLPQDGRFHMEVKGHKIDVRISTMPIYHGESVVMRLLDQSAGLLTLNETGMPDAILQRVRKQIKRPHGML LVTGPTGSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRINQVQVNHKIGLNFSNVLRTTLRQDPDIIMVGEMRDHET VEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCQNCAVDYQLTSQDKAWLTSVSKG VDFSQARFRMGTGCQSCSGTGYRGRIGIFELLELDEAMVDAMRTGNPQAFAQAAYASPNFTPLLISALNYLKQGMTTIEE VARLVEDVSETQIPLSQEMAQFDGAGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-76 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sama_0457 | YP_926337.1 | MSHA biogenesis protein MshE | VFG1876 | Protein | 6e-86 | 45 |
| Sama_0457 | YP_926337.1 | MSHA biogenesis protein MshE | VFG1880 | Protein | 6e-75 | 41 |
| Sama_0457 | YP_926337.1 | MSHA biogenesis protein MshE | VFG0182 | Protein | 3e-79 | 41 |
