Gene Information

Name : Sama_3534 (Sama_3534)
Accession : YP_929406.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4165671 - 4166348 bp
Length : 678 bp
Strand : +
Note : KEGG: son:SO4428 DNA-binding response regulator

DNA sequence : 
GTGAAAATCCTTTTGGTTGAAGACGACAACACCACTTCAGAATACATAGTCAAAGGTTTTTCCGAACAGGGACACAATAT
TGAAGCGGCCGCCGATGGTCACCAGGGCCTGTTGCTGGCCACCAGCAACCAGTATGACCTGATTATTCTCGACCGCATGC
TACCCGGTCTCGATGGGCTGGCACTGCTGGCGGCGCTGCGTGCCAACGCCAATCAAACCCCGGTGCTTATCCTTTCAGCC
TTGTCCAACGTGGACGAGCGGGTAAAGGGCCTGCGCAGCGGCGGCGACGATTATATGACCAAGCCTTTCGCCTTCTCAGA
GCTTCTGGTGCGCGCCGAAATTCTGGTGTCCCGGGGGCAAACCGCGCCGGTGCAGACACACCTGCAAGCGGGCCCACTGG
AAATGGAGCTGCTCACCCGCAACGTGACTCTCGATGGCCACGAGCTGATGCTGCAACCCAAAGAGTTTCAACTGCTCAAG
TACCTGATGGAACACCCTAATCAGGTCATAAGCCGTACCCTGTTGTTCGAGGCTGTGTGGGATTATCACTTCGATCCGCG
CACCAATGTGATCGACGTACATATCGCCAAACTCAGACGCAAGTTTGAAGAGCTGGGCTACGGCGAGCTGATAGAAACAG
TCCGGGGAGCGGGTTATCGTCTTCGCCAAAGGCATTAA

Protein sequence : 
MKILLVEDDNTTSEYIVKGFSEQGHNIEAAADGHQGLLLATSNQYDLIILDRMLPGLDGLALLAALRANANQTPVLILSA
LSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQTAPVQTHLQAGPLEMELLTRNVTLDGHELMLQPKEFQLLK
YLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGYGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-35 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-35 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_3534 YP_929406.1 response regulator receiver protein BAC0197 Protein 2e-35 45
Sama_3534 YP_929406.1 response regulator receiver protein BAC0083 Protein 6e-38 45
Sama_3534 YP_929406.1 response regulator receiver protein BAC0638 Protein 3e-34 45
Sama_3534 YP_929406.1 response regulator receiver protein BAC0347 Protein 2e-41 44
Sama_3534 YP_929406.1 response regulator receiver protein BAC0111 Protein 1e-43 44
Sama_3534 YP_929406.1 response regulator receiver protein BAC0125 Protein 2e-35 43
Sama_3534 YP_929406.1 response regulator receiver protein BAC0308 Protein 5e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_3534 YP_929406.1 response regulator receiver protein VFG0596 Protein 9e-36 44
Sama_3534 YP_929406.1 response regulator receiver protein VFG1389 Protein 3e-31 43