Gene Information

Name : Sama_3435 (Sama_3435)
Accession : YP_929307.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 4065948 - 4067468 bp
Length : 1521 bp
Strand : +
Note : KEGG: son:SO4480 aldehyde dehydrogenase

DNA sequence : 
ATGATTTACAGCGCTCCGGGCACAGCGGGTGCCATCGCTTCATTCAAGGCCAGATACGACAACTTTATTGGCGGCAAGTG
GGTGCCCCCCGTGGGTGGCGAGTACTTTGATAACGTCTCGCCTGTGGATGGCAAGGTGTTTTGTCAGGCGGCCCGCTCTG
ACTATCGCGACATCGAGCTCGCCCTCGATGCCGCCCATGCCGCCAAAGACAGCTGGGGCAAAACCTCGGTAACCGAGCGC
AGCAATCTGCTTTTGAAAATTGCCGATAGGGTCGAGCAGCATCTCGAACGTCTCGCCGTGGTGGAAACCTGGGAAAACGG
CAAAGCGGTGCGCGAGACCCTGAACGCCGACCTGCCTTTATTTGTTGACCACTTCCGTTATTTCGCCGGTTGTATCCGCG
CCCAGGAAGGCAGCGCGGCAGACCTTGATGCTAATACCGTGAGCTACCACCTCCCTGAGCCTTTGGGCGTGGTCGGGCAA
ATTATCCCCTGGAACTTCCCCCTGCTGATGGCGGCCTGGAAAATCGCCCCGGCGCTGGCGGCGGGTAACTGTGTAGTGCT
CAAGCCTGCCGAGCAAACACCGGCCTCCATCATGGTGCTTTTGGAGACTATCGAAGATCTGCTGCCCCCCGGCGTACTCA
ATGTGGTTAATGGTTTTGGCGCCGAAGCCGGTGCCGCCCTCGCCACCAGCAAGCGCATCGCAAAACTGGCCTTTACCGGC
TCCACTGAGGTGGGTAATCACATCCTCAAATGCGCCGCGGAAAACCTGATCCCCTCAACCGTGGAACTTGGCGGCAAGTC
GCCCAACATCTACTTTGCCGATGTGATGAACCACGAAGACAACTACCTCGACAAGGCCATCGAGGGGATGTTGCTGGCCT
TCTTCAACCAGGGCGAAGTGTGCACCTGCCCAAGCCGGGTACTGGTGCAGGAATCCATTTACGATGCCTTTATTGAGAAG
GTCATTGCGCGTGCCAAAACAATTCGTCAGGGCAGCCCGCTGGATACCGACACCCAGGTGGGCGCCCAGGCATCCCGCGA
GCAATACGACAAAATTTTAGGCTATCTGGACATTGGCCGTGCTGAAGGCGCCAAAGTACTGATGGGCGGAGAATTCAAAC
TACAGGACGGCCCCGAAAAAGGTGGTTATTACATCCAGCCCACCATCCTCAAAGGCCACAATAAGATGCGGGTGTTCCAG
GAAGAGATCTTTGGCCCCGTGGTATCGGTTACCACCTTCAAAGACGAAGCCGAAGCATTGGCCATTGCCAACGATACCCA
GTATGGCCTTGGTGCCGGTGTCTGGACCCGCGACATGAATCTGGCCCAGCGCATGGGCCGCGGCATTCAGGCTGGTCGGG
TGTGGATTAACTGCTACCACGCCTACCCTGCCCACGCTGCCTTTGGTGGCTATAAAAAGTCGGGCATCGGCCGTGAGACC
CACAAGATGATGCTGTCTCACTACCAGAACACCAAAAATCTACTGGTGAGTTTCGACACCAATCCGCTGGGATTCTTTTA
A

Protein sequence : 
MIYSAPGTAGAIASFKARYDNFIGGKWVPPVGGEYFDNVSPVDGKVFCQAARSDYRDIELALDAAHAAKDSWGKTSVTER
SNLLLKIADRVEQHLERLAVVETWENGKAVRETLNADLPLFVDHFRYFAGCIRAQEGSAADLDANTVSYHLPEPLGVVGQ
IIPWNFPLLMAAWKIAPALAAGNCVVLKPAEQTPASIMVLLETIEDLLPPGVLNVVNGFGAEAGAALATSKRIAKLAFTG
STEVGNHILKCAAENLIPSTVELGGKSPNIYFADVMNHEDNYLDKAIEGMLLAFFNQGEVCTCPSRVLVQESIYDAFIEK
VIARAKTIRQGSPLDTDTQVGAQASREQYDKILGYLDIGRAEGAKVLMGGEFKLQDGPEKGGYYIQPTILKGHNKMRVFQ
EEIFGPVVSVTTFKDEAEALAIANDTQYGLGAGVWTRDMNLAQRMGRGIQAGRVWINCYHAYPAHAAFGGYKKSGIGRET
HKMMLSHYQNTKNLLVSFDTNPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-177 72
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 0.0 71
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 0.0 71
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 0.0 71
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 0.0 71
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 6e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_3435 YP_929307.1 aldehyde dehydrogenase VFG0082 Protein 1e-177 72