Gene Information

Name : Sama_3303 (Sama_3303)
Accession : YP_929175.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Virulence
Product : response regulator receiver protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3929286 - 3929960 bp
Length : 675 bp
Strand : +
Note : KEGG: son:SO4647 DNA-binding response regulator

DNA sequence : 
ATGCGCCTGTTACTGGTTGAAGACGATGCGGCCCTGGCCGCCAATTTGGGGGATCACCTCAGAGAAAACCTCTACAGCGT
GGATGTGGCCGCCGACGGCGAGCTGGGGCTGTTTCAGGGGCTGGAGTACGACTACGACGCCGCCATTATCGACGTAGGCC
TGCCCAAGCTCGATGGCATCAGTCTGGTCACCAAGCTCAGGGCCGAAGGCCGTGAGTTCCCCATTCTTATCCTCACCGCC
CGGGACAGCTGGGAAGACAAGGTCGAAGGCCTGGATGCCGGTGCCGACGACTACCTCACCAAGCCGTTCCATCCCCGGGA
ACTGGCCTCGCGCTTAAAGGCACTGATTCGCCGCAGCGCCGGTAAGGCCAGCCCCGTTATCGAAAACGGCCCTGTTACCC
TCAATACCGCCAGCGGCGAAGTATTGCTTAACGGCGAGCGGGTCAGCCTGTCGGCTTCCGAGTTCCGGCTGCTGCAATTT
TTGATGATGCACCGGGGCGAGGTGCAATCCAAAACCATGCTCACCGAGCATATTTACGATCAGGACTTCGACCTCGACTC
CAACGTGATTGAAGTCTTTATCCGCCGGTTGCGTAAAAAGCTCGACCCGGACAACGAGCTCGGGCTGATTGAAACCCTGC
GCGGCCAGGGCTACCGGCTGAACCTGCTGACCTGA

Protein sequence : 
MRLLLVEDDAALAANLGDHLRENLYSVDVAADGELGLFQGLEYDYDAAIIDVGLPKLDGISLVTKLRAEGREFPILILTA
RDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALIRRSAGKASPVIENGPVTLNTASGEVLLNGERVSLSASEFRLLQF
LMMHRGEVQSKTMLTEHIYDQDFDLDSNVIEVFIRRLRKKLDPDNELGLIETLRGQGYRLNLLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-30 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_3303 YP_929175.1 response regulator receiver protein NC_002516.2.879194.p Protein 1e-45 47
Sama_3303 YP_929175.1 response regulator receiver protein NC_002695.1.913289.p Protein 1e-31 45
Sama_3303 YP_929175.1 response regulator receiver protein CP000034.1.gene2022. Protein 2e-31 45
Sama_3303 YP_929175.1 response regulator receiver protein CP000647.1.gene1136. Protein 2e-32 44
Sama_3303 YP_929175.1 response regulator receiver protein CP001918.1.gene2526. Protein 3e-31 44
Sama_3303 YP_929175.1 response regulator receiver protein BAC0530 Protein 2e-32 44
Sama_3303 YP_929175.1 response regulator receiver protein BAC0083 Protein 2e-33 43
Sama_3303 YP_929175.1 response regulator receiver protein BAC0638 Protein 2e-26 43
Sama_3303 YP_929175.1 response regulator receiver protein CP001138.1.gene1939. Protein 3e-31 43
Sama_3303 YP_929175.1 response regulator receiver protein CP004022.1.gene1005. Protein 4e-34 43
Sama_3303 YP_929175.1 response regulator receiver protein BAC0487 Protein 4e-27 43
Sama_3303 YP_929175.1 response regulator receiver protein BAC0308 Protein 7e-32 41
Sama_3303 YP_929175.1 response regulator receiver protein BAC0125 Protein 9e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_3303 YP_929175.1 response regulator receiver protein VFG0475 Protein 2e-31 43
Sama_3303 YP_929175.1 response regulator receiver protein VFG0596 Protein 9e-27 42
Sama_3303 YP_929175.1 response regulator receiver protein VFG1389 Protein 4e-30 41