Gene Information

Name : rph (Sama_0320)
Accession : YP_926201.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : -
Position : 387592 - 388305 bp
Length : 714 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCGTCCAGGTAATCGTACCCCGGCTCAGACCCGCCCCATCAGCATCACCCGTAACTTTACTGCCCACGCCGAAGGCTC
TGTGCTGGTAGAGTTTGGCGAAACCAAGGTGCTGTGTACCGCCAGTTTCACCGAGGGTGTACCACGCTTCCTTAAAGGCA
GTGGGCAGGGTTGGTTGACTGCCGAATATGGCATGCTGCCGCGTTCTACCCATAGCCGTATGGACCGCGAAGCCGCCCGT
GGCAAACAGTCTGGCCGTACCCAGGAAATCCAGCGTCTGATTGGCCGCGCCCTGCGTGCTGCCGTGGATTTAAAGCAACT
GGGCGAAAACACCATAGTGGTGGACTGTGATGTTATTCAGGCCGATGGTGGCACCCGTACCGCAGCTATCACAGGAGCCT
GTGTGGCACTGGTGGATGCGCTGAACTGGGCCCGCGGTAAAGGTTTGGTGAAAGCCAACCCACTGAAGTTTTTGATTGCG
GCTGTGAGCGTGGGTATCCACAACGGCGAAGCCATTTGCGATCTCGAGTATGTGGAAGACAGCGCTGCCGAAACCGATAT
GAATGTGGTGATGACCGAAACCGGCAAGATCATTGAAGTTCAGGGTACGGCCGAGGGTGAGCCTTTCACCCACGAAGAGT
TGCTGACCATGCTGGAGCTGGCCAAACACGGTATCCGCGAAATCATTGATACTCAGAAAGCGGCTCTGAACTGA

Protein sequence :
MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLTAEYGMLPRSTHSRMDREAAR
GKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQADGGTRTAAITGACVALVDALNWARGKGLVKANPLKFLIA
AVSVGIHNGEAICDLEYVEDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 9e-66 62