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Name : lysS (Sama_2877) Accession : YP_928749.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 3416440 - 3417942 bp Length : 1503 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACACATCCAAGACGAGAACAAGCTGATTGCTGAACGTCGTGCCAAGCTGGAACACGTCCGCAAGAACTGCCC AGCCAATGGTCACCCGAACACCTTCCGCCGTAAACACAAGGCTGCCGAGCTTCAAGCGCAGTTCGGTGACAAGACCAAGG AAGAGCTGGAAGCCCTGGGTTTCCAAACCGCCATCGCTGGCCGCGTAATGGCCAAGCGTGGTCCTTTCCTGGTACTGCAG GACGTGTCTGGCCGTATCCAGGCCTATGCCGATAAAGGCGTACAGGCCGACTTGAAAGACCGTTATGCCGGTCTGGATAT CGGTGACATCATCGGCGTGGAAGGTACCCTGCATCTGTCCGGTAAGGGCGACCTCTATGTGAACATGGAACGCTACGAGC TGCTGACCAAGGCGCTGCGCCCACTGCCTGAGAAATTCCACGGTCTGACCGACCAGGAAACCCGCTACCGCCAGCGTTAT GTTGACCTCATCGTGAACGAAGACTCACGTGAAGCCTTCAAAATGCGCTCAAAAGTGGTTGCAGCTATCCGTAACTTCAT GATCAAAAAAGAGTTCATGGAAGTTGAAACCCCAATGATGCACGTGATCCCAGGCGGCGCTTCTGCCCGTCCTTTCGTCA CCCATCACAATGCGCTGGACATCGAAATGTACCTGCGTATTGCCCCCGAACTGTACCTGAAGCGTCTGGTTGTGGGCGGT TTCGAGCGCGTGTTCGAAATCAACCGTAACTTCCGTAACGAGGGTCTGTCGCCACGCCATAACCCGGAATTCACCATGAT GGAATTCTATATGGCCTACGCCGACTACAAGGATCTGATTGATTTGACCGAAGAGATGCTGTCCAGTATCGCCAAGGAAC TGCTGGGTGACACCAAGCTGCCTTACGGCGAGCACGTGATTGATTTCGGCGGCCCATACACCCGTATGAGCATGCTCGAA GCCATCAAGCACTACAACCCGGACAACGCCACCATCCAGGCCATGACCTACGAAGAAGTGAAGAACATAGACTTCATGCG TAAGCTTGCCAAGGACGTGGGCATCGAAACCGAAACCTTCTGGAGCTGTGGTCAGCTTCTGGAAGAAATCTTTGGTGAGA CTGCCGAGCCCAAGCTGATGCAGCCAACCTTCATCACTGGCTACCCAGCGGACATTTCGCCGCTGGCCCGTCGCAGCGAT GGTAATGATTTCATCACCGACCGTTTTGAATTCTTCATTGGTGGACGTGAAGTGGCCAACGGCTTCAGCGAGCTTAACGA CGCTGAAGATCAGGACAACCGCTTCAAGGCGCAGGTAGAAGCCAAGGACGCCGGTGACGATGAAGCCATGTTCTACGATG CTGACTTCATCACAGCGCTGGAACACGGTCTGCCGCCCACTGCTGGTCAGGGCATTGGTATCGACCGTTTGGTAATGCTC TTTACCAACACTCACACCATCCGTGACGTGATCCTGTTCCCGGCCATGCGTCCTCAGGCGTAA Protein sequence : MTEHIQDENKLIAERRAKLEHVRKNCPANGHPNTFRRKHKAAELQAQFGDKTKEELEALGFQTAIAGRVMAKRGPFLVLQ DVSGRIQAYADKGVQADLKDRYAGLDIGDIIGVEGTLHLSGKGDLYVNMERYELLTKALRPLPEKFHGLTDQETRYRQRY VDLIVNEDSREAFKMRSKVVAAIRNFMIKKEFMEVETPMMHVIPGGASARPFVTHHNALDIEMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLIDLTEEMLSSIAKELLGDTKLPYGEHVIDFGGPYTRMSMLE AIKHYNPDNATIQAMTYEEVKNIDFMRKLAKDVGIETETFWSCGQLLEEIFGETAEPKLMQPTFITGYPADISPLARRSD GNDFITDRFEFFIGGREVANGFSELNDAEDQDNRFKAQVEAKDAGDDEAMFYDADFITALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-135 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_928749.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-135 | 56 |
