Gene Information

Name : Sama_2864 (Sama_2864)
Accession : YP_928736.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3402800 - 3403492 bp
Length : 693 bp
Strand : -
Note : KEGG: sdn:Sden_2850 ABC transporter related

DNA sequence : 
ATGTTAACCATGAAGAATATCAATAAATTGTTCCGTACAGACCTGGTGGAGACCCATGCGCTGCGGGACTTTAACCTGGA
GGTGGCCGAAGGGGAGTTTGTGGCCGTAACCGGACCTTCAGGCTCGGGAAAAACCACTTTTTTGAATATTGCCGGCTTGC
TGGAAAATGCCTCCGGCGGTGAATACTGGCTCGATGGTGAGAACGTGGCCAACCTCAGTGACAGTGCGGCAGCCAGGGTG
CGAAATCAGAAAATCGGTTTTATTTTTCAGGGCTTTAACCTTATTCCGGATTTAAACCTGGCCGAAAACGTGGAGCTGCC
CCTGCGTTACCGTGGTTTTGGCAGCAGCGAGCGCAAGCGCCGAGTGGAGCAGGCCCTGTCCCAGGTGGGGCTCGCCGCAC
GACAAAAACACCTGCCATCCCAGTTGTCCGGTGGTCAGCAGCAACGGGTGGCCATCGCCCGCGCGCTGGCAGGCGAGCCC
CGTTTTTTGCTGGCGGATGAGCCGACGGGTAACCTCGATTCACTGATGGCCCGTCAGGTGATGGAGCTTTTGGAAGACAT
TAATCGCCAGGGTACCACCATCATCATGGTGACCCACGATGGTGAGCTGGCCCGCCGCGCTGAGCGCAACATCCAGATAG
TCGATGGCCAGGTGTGTGATTTCCTCACCAGCCGCGCCGTGGTTAACGGATAA

Protein sequence : 
MLTMKNINKLFRTDLVETHALRDFNLEVAEGEFVAVTGPSGSGKTTFLNIAGLLENASGGEYWLDGENVANLSDSAAARV
RNQKIGFIFQGFNLIPDLNLAENVELPLRYRGFGSSERKRRVEQALSQVGLAARQKHLPSQLSGGQQQRVAIARALAGEP
RFLLADEPTGNLDSLMARQVMELLEDINRQGTTIIMVTHDGELARRAERNIQIVDGQVCDFLTSRAVVNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 3e-20 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-31 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-35 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-35 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-35 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_2864 YP_928736.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-54 53
Sama_2864 YP_928736.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-46 51
Sama_2864 YP_928736.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-40 46
Sama_2864 YP_928736.1 ABC transporter-like protein NC_012469.1.7685735. Protein 1e-37 44
Sama_2864 YP_928736.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-32 41