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Name : smpB (Sama_2388) Accession : YP_928262.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2867670 - 2868152 bp Length : 483 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAGAAAAACTCCAAAAAGGCCGCCCAGCCGGCCACGATCGCCCGCAATAAGCGCGCGACCTTCGAATACAAATT CGATGAAAAATTCGAGGCAGGCCTATCCCTGATGGGATGGGAAGTGAAGTCTATCCGCGCCGGAAAAATCAACATCTCTG AAAGCTACGTGATGCTGAAAAACGGTGAAGCCTTCCTGCACCACTGCCATATCACCCCACTGCACGCCGCCTCCACTCAC GTGGTGTGTGACCCTACCCGCCCACGCAAGCTGCTGCTTAACCGCCGCGAGCTCGACCGCTTGGCAGGTCTCGTTGAGCG CCAGGGCTATGCCATCGTGCCTATCTCCATGTACTGGCGCAAAGGTGCCTGGGTTAAGGTCGAGATTGGTCTGGGTAAAG GTAAAAAAGCCCACGACAAACGCGATGACATCAAGCAGCGTGACTGGGACATTGAAAAAGCCCGGGTGATGAAGAACAAA TAA Protein sequence : MVKKNSKKAAQPATIARNKRATFEYKFDEKFEAGLSLMGWEVKSIRAGKINISESYVMLKNGEAFLHHCHITPLHAASTH VVCDPTRPRKLLLNRRELDRLAGLVERQGYAIVPISMYWRKGAWVKVEIGLGKGKKAHDKRDDIKQRDWDIEKARVMKNK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-40 | 55 |
