Gene Information

Name : fliP (Sama_2287)
Accession : YP_928162.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2753225 - 2753974 bp
Length : 750 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
GTGACCCGCGTGTTAGCGATGTTATTCTGGATATTGGCTGGCATGGCCTCGCTGCCAGCCTTCGGCGCAGATGGTGTCTT
GCCTGCGGTAACCGTCACCACCACACCGGATGGGGGCACACAGTACTCGGTCACACTGCAAATTCTGATGCTGATGACGG
CGCTGAGCTTTTTGCCCGCCATGGTTATCATGCTCACTTCCTTTACCCGTATCATAGTCACCCTGTCGTTGCTCAGACAG
GCTATCGGCCTGCAGCAGGCACCCTCGAATCAGGTACTGATTGGCCTGAGTCTCTTTATGACCTTTTTCATCATGGCGCC
CGTGTTCGACAAAATTTATGAGCAGGGCGTGAAACCATATATGGAAGAAACCTTGCCCATCGACCAGGCATTCGAGCGAG
GTAAAGAGCCGCTGAAAGCCTTTATGTTGTCGCAGGTGCGTATCACCGACTTGGAAACCTTCGTGAATATCGCCGGCTAC
GACAACATCAAGTCACCCGAAGAGGCGCCCATGACGGTGATTATTCCTGCCTTTATCACCAGCGAGTTGAAAACCGCCTT
CCAGATTGGCTTTATGCTGTTTGTGCCCTTTTTGGTTATCGACCTGGTGGTCGCCAGTATCCTGATGGCCATGGGGATGA
TGATGCTGTCGCCAATGATTGTGTCATTGCCCTTTAAAATCATGCTGTTTGTGCTGGTGGATGGCTGGAGCCTGGTGATG
GGCACGTTAGCCAACAGTTTTGGTACCTGA

Protein sequence : 
MTRVLAMLFWILAGMASLPAFGADGVLPAVTVTTTPDGGTQYSVTLQILMLMTALSFLPAMVIMLTSFTRIIVTLSLLRQ
AIGLQQAPSNQVLIGLSLFMTFFIMAPVFDKIYEQGVKPYMEETLPIDQAFERGKEPLKAFMLSQVRITDLETFVNIAGY
DNIKSPEEAPMTVIIPAFITSELKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM
GTLANSFGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_928162.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-65 66
fliP YP_928162.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-57 61
fliP YP_928162.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-60 60
fliP YP_928162.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-54 53
fliP YP_928162.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-26 41