Gene Information

Name : Sama_2247 (Sama_2247)
Accession : YP_928122.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 2711624 - 2712190 bp
Length : 567 bp
Strand : -
Note : KEGG: ssp:SSP0070 capsular polysaccharide synthesis protein

DNA sequence : 
ATGTACTCAAAGATAATTAAGCGTATTTTCGATTTATTTATTGTTTTGTTTGCAACAGTTTTTTTGTTTCCTTTACTGAT
TGCTGTTTGCTTTTTAATTAAGGTCTTTGATCCCGGTCCAATTATTTTCAAGCAAAAACGCATTGGTCGGAATGCGAAAG
AATTCGATTTTTATAAATTTAGAAGCATGCCGGTTAACACAGGGGACATTCCGTCCGATAAATTGGGCTCAATAGACATT
ACTTGGGTTGGTAGGCTTATTAGAAGGACTAATCTTGATGAATTACCACAGTTATTTAATGTCTTGAAAGGTGATATGAG
TATTGTTGGTCCACGTCCACCAATTGTATCTCAGCGGCAATTGGTAGAGCTTAGAAAGCAGAATGGCGCAATAGCGTGTA
GACCAGGTTTGACTGGATTAGCTCAAGTTAGCGCGTTTGACGGGATGACAGTTGAGCAGAAAGCTGCTTTTGATGCTGAA
TATGCTAGAAAGGTCTCGTTTTTAACTGATGTTAAAATAATCCTTCGTACATTCACTTATTTGCTTAAGCCGCCACCTGT
TTATTAA

Protein sequence : 
MYSKIIKRIFDLFIVLFATVFLFPLLIAVCFLIKVFDPGPIIFKQKRIGRNAKEFDFYKFRSMPVNTGDIPSDKLGSIDI
TWVGRLIRRTNLDELPQLFNVLKGDMSIVGPRPPIVSQRQLVELRKQNGAIACRPGLTGLAQVSAFDGMTVEQKAAFDAE
YARKVSFLTDVKIILRTFTYLLKPPPVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 3e-34 50
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 6e-34 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_2247 YP_928122.1 capsular polysaccharide synthesis protein VFG1309 Protein 7e-33 45