|
Name : Sama_2244 (Sama_2244) Accession : YP_928119.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2708203 - 2710137 bp Length : 1935 bp Strand : - Note : KEGG: son:SO3171 polysaccharide biosynthesis protein DNA sequence : ATGGACTTTTTCCAATTTTTATTTTCGCTTAAGCGGCCACACAAACGTATGGTTAGCGTGGCGGTTGACTCAGTGTTTTT GGTCTTGTCCTTCTGGTTTGCGTTGTTCGTGAGGCTGGACTCTGTTGAGGTAGTGCTTAACAGTCAATTTTGGCTGCTTA TTGCACTGGTTTGCCCAGTGAGTATTGCGGCGTTTGTCAAGCTGGGTCTCTATCGTGCAGTGCTCAGGTATCTCGGTACT CAGGCAATGACAGCCATAGTGCTTGGTGTGATTGTTAGCACGCTTGCCATGGTGAGTTTTGCTTACTTTTTGTCGGTAGA CTTGCCGCGAACGGTTCCATTTATCTTTGCTTCCTTTGCGTTGGTATTCGTAGGCGGGGCCAGAGCGCTGATGCGGTCAC TGGTGGGGAATGGCATTAACCGTCGAGGTGAGCCTGTCATCATTTATGGTGCTGGTGTAAGTGGAAGGCAAACCGCGTTG GCGCTTGCACAAAGTCATGAATACCATCCTTTCGCGTTTGTCGATGACGATGAAACCTTGCATGGCACTGTGATCCAGGG GCTACATGTGCATTCCCCTTCAATCATAAAAAAACTGATTAAGCAGCAAAAAGCGTCAAGAGTGCTTTTGGCCATGCCAA GTGCGAGCCGGGCACGTCGTCAACAAATTTTGCAGACTCTTGAACCTTTATCGGTAAAGGTAATGACCTTGCCCGCCATG GCTGATTTAGTCAGTGGTAATAAGCTGTTCAGTGACGTAAAAGAAGTAGAGATTGAAGACTTACTTGGCAGGGATGCGGT AGCGCCAAGAAAGGATTTAATGGCGGCTAACATTACCGGTAAAGTCGTGATGGTGACAGGTGCGGGTGGTTCCATCGGCT CTGAACTGTGCAGGCAGATATTACGACTGGCGCCACGCAAGCTGGTGTTGTTTGAGTTGTCCGAGTTTGGTCTTTACTCC ATCGAACGGGAACTTCAGGCGATTAGAGCAGAGCTCGGTCTCGACGTTGAACTATTCCCTATGATGGGCTCAGTACAACG CCAAAATCGTGTTCAGGCCGTCATGGAAGCGTTTAAAGTACAAACTGTTTATCATGCAGCGGCTTATAAGCATGTTCCCC TGGTTGAGCACAATGTGGTAGAAGGGGTTCGCAATAATGTATTTGGCACCCTTTATACGGCTCAAGCGGCAATAGCGACC GGTGTTGAGACTTTTGTTCTCATTTCAACGGATAAAGCGGTGCGCCCCACGAATGTGATGGGTACCACCAAACGAATGGC CGAGCTGGTGCTTCAAGCGCTTTCGAAACTGAATTCCGGTACGCGTTTTTGTATGGTGCGTTTTGGTAACGTACTTGGCT CGAGTGGTTCTGTGGTGCCTTTGTTCCGTAAACAAATTGCTAACGGTGGCCCCGTTACGGTCACTCATCCTGAAATTACC CGATTTTTTATGACAATTCCTGAAGCATCACAGCTGGTTATTCAGGCCGGGGCTATGGGTATAGGTGGCGACGTTTTTGT ACTCGATATGGGGCAATCCGTTAAAATTGTCGACCTTGCCCGTAAGATGATTCGGCTGTCAGGCTTCGAAGTGAAAGATG AGCATAATCCAGATGGGGATATCGAAATCCAGTTTAGTGGTCTTCGTCCCGGGGAGAAGCTGTACGAAGAATTGCTTATC GGCGATAACGTTGAAGGCACTGGGCACGAGCGGATTATGACAGCCCATGAAGTGTTCTTAACGTGGGAAGAGCTCAAGCC AGTACTCGACAAACTGGATATGGCTTGTCACGCGTTTGATCATGAATCCATTCGCGAGCTGATGCTGAAGGCGCCCACAG GTTTTAATCCAACAGATGGGATCTGTGATCTTGTATGGTTAAACCGGCGCCATGTCGAAGACAGATCAAACGTTGTGGCG TTGAAAGGCCAGTAA Protein sequence : MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPVSIAAFVKLGLYRAVLRYLGT QAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFALVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTAL ALAQSHEYHPFAFVDDDETLHGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQILRLAPRKLVLFELSEFGLYS IERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAT GVETFVLISTDKAVRPTNVMGTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGDIEIQFSGLRPGEKLYEELLI GDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFDHESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVA LKGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-84 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-80 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sama_2244 | YP_928119.1 | polysaccharide biosynthesis protein | VFG0029 | Protein | 1e-133 | 50 |
| Sama_2244 | YP_928119.1 | polysaccharide biosynthesis protein | VFG1300 | Protein | 1e-83 | 46 |
