|
Name : Sama_2145 (Sama_2145) Accession : YP_928020.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2589979 - 2592063 bp Length : 2085 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : TTGCGCCCACCGGGAATTTTCGCTACATTTACTGTAAATTCATCCAGTGCTTTTGCACCAGAATATCCCGCCATGATCCT CTATATCGCCGAAAAACCGAGCCTCGGCCGCGCCATCGCTGAGGTGTTACCCAAACCCCATAAAAAGGGTGAGGGTTATA TTGAGCTTGGCAACGGCGATTGTGTCACCTGGTGTATTGGCCACTTACTGGAGCAGGCCGAGCCGGATGCGTATTCTCCC GAATACAAGCAGTGGCAGCTTGCCCATCTGCCCATTATTCCCGCCGAGTGGAAACTCACTCCACGAAGTTCGGCCAAAAG TCAGCTGGCAGTCGTAAAGCGCCTGATTAAACAGGCTTCTTCTTTGGTTCATGCAGGGGACCCGGACCGCGAAGGACAGC TTCTGGTGGATGAGGTAATTTCCCACGCCAAGGTTTCTGCATCCAAATTGGCCTCCACCCAGCGCTTATTGATTTCCGAT TTAAACCCCGACGCGGTGCGCCGCGCACTGGGACAGCTTCGCAGCAATAAGGAGTTTGTGCCGCTTGCCACATCGGCATT GGCGCGCAGTCGTGCCGACTGGCTTTACGGCCTGAATATGACCCGTGCTTACACGCTTCAGGGCAGAAAGGTGGGGTATG CAGGGGTGTTGTCTGTCGGACGGGTGCAAACCCCATTATTGGGTTTGGTGGTTCGCCGTGACCTGGACATTGAGCACTTT GAGCCCAAAGATCACTATGAGGTGCTTGCTCACATTACCACAGACAAGGGCGAGTCCTTTTGTGCCAAGTGGCAACCCAG CGAAGCTTGTCAGCCGTACATGGATGAAGAGGGGCGGGTGCTTTCACGCCGCCTCGCCGAAACTGTGGTGAGCCGCATTG GCGGTAAGCCGGCACTGGTTGAGCATGTCAGCCATAAAGACAAGAAGCAGGCGCCGCCATTGCTGTATAGCCTCTCGGCG CTGCAAATCGATTGCGCCAAACGTTTTGGGATGAGTGCCAAAGAGGTGCTGGATACGGCCCAGAGCCTGTATGAGCGACA CAAGCTGATTACCTATCCCCGCTCTGACAGCCGTCATTTACCCAAAGAACAACTTGCTTTGGTGCCTGATGTGCTGTCGG CCGTCAGTGCCAACGCCCCTGAGCTTTTGGAAGGGGCGCCGTCACCTGATTTGCACTTGGTGTCCAAGGCCTGGGATGAC AGTAAGGTGGATGCCCACCACGCCATAGTGCCAACGGGCAAACGAACGGCGCTGTCGCAACTTAACCAGCGGGAGCGTCA GCTTTATTTGCACATTGCACGGCAATATTTGGCGCAGTTTTACCCCAATCGCCTTCTGGCAGATACCGAAATCCAGCTGA TTATCGAAGGCGGTAGCTTTATCGCAAGGGCGTCGGTTGAGCGAGCCCCAGGTTGGCGGGTATTGTTTCAGGGACGCAGC ACAGAGCAGGACGAGGCGAAAGAGCCACAAGAGACTGATGCCAGCCAAAAGACGCCCTTGCCAGCCCTGAATAAGGGCGA CATTGCCCGGTGCTGTCATGGTGAGTTATTGGCAAAGCAAACCCAACCCCCAAAACACTTTACCGATGCGACCTTGCTCA GTGCCATGACCGGCATTGCCCGTTATGTGAGTTCACCGGACATTAAACGTATATTGAAGGACACGGATGGCCTTGGCACC GAAGCGACCCGGGCCGGGATCATCGAACTTCTGTTTAAACGTGGCTTTCTGGTGCGCCAGGGTAAAAGCATCGTGGCATC CCAAGCCGGGCGGGGGTTAATTGCCAGCTTGCCTGAGGTGGCCACCACTGCCGATATGACCGCCCTGTGGGAGCGTCAGC TCAGCGATATTTGCCAACGTCAGCTTTCCTATAAAGGCTTTATGACACCACTGGTATTGGAACTTGAAAAGTTGATTGAG CAGGCCGCTGCCAGTTTACCGACCGCTCTGGCCGGCGTGACAGCGGCAGGGCCTAAACGGTCTTTCAGAGGCAGAGCTGG CAAGGGGAAAGGGCGTGCTCCCGGGGCAAGTGCTGGCAGAGGTCGCAAAAGCCGGTCAAGCCCAAGCGGCAAGGTTGCAA CTTGA Protein sequence : MRPPGIFATFTVNSSSAFAPEYPAMILYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSP EYKQWQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHAKVSASKLASTQRLLISD LNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRAYTLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHF EPKDHYEVLAHITTDKGESFCAKWQPSEACQPYMDEEGRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQAPPLLYSLSA LQIDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPELLEGAPSPDLHLVSKAWDD SKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFYPNRLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRS TEQDEAKEPQETDASQKTPLPALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILKDTDGLGT EATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPEVATTADMTALWERQLSDICQRQLSYKGFMTPLVLELEKLIE QAAASLPTALAGVTAAGPKRSFRGRAGKGKGRAPGASAGRGRKSRSSPSGKVAT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-115 | 43 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 4e-100 | 42 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-112 | 42 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-112 | 42 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-112 | 42 |
