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Name : Sama_1860 (Sama_1860) Accession : YP_927735.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 2263751 - 2265745 bp Length : 1995 bp Strand : - Note : required for the synthesis of the hydromethylpyrimidine moiety of thiamine DNA sequence : ATGTCAAACCGCCGCGAAACCCGTAAAGCCGCCCAGGACTTTATCGATAACTTAAAGCCGCTGCGCCGCCCCAATTCCGA AAAGATTTTCATTGAAGGCTCACGGCCTGATATCCAGGTGGGCATGCGCCAAATCCATCAAACCGATACCCGTATCGTGA ATACCCGCGGCGAAGAAACCTTTGAGGCCAACCCACCCATCAAGGTGTACGACTGCGCCGGTCCTTATTCAGACCCCAAT GCCGACATCAATGTGCGCCGAGGCCTGCCCAAGCTGCGTGAAGGCTGGATTTTAGCGCGTAGCGATACCGAAGAGCTTAA CAGCGCCTCATCCAACTTTACCCAGCAGCGTCTCGCCGATGACGGGCTGGATCACCTGCGTTTTGATGTGCTGCCAAAGC CGCGCCGCGCCAAGGCCGGTAAGCGGGTTACCCAGCTGCATTATGCCCGTCAGGGTATTATCACCCCTGAGATGGAATAC ATCGCCATTCGCGAAAACATGGCCCGGGATGAAGTCACCGATGAGCAGCTTAACCGCAAAAAACCAGGCGAAGCCTTTGG CGCTCTGGTGAGCAAACCCATTACCCCTGAGTTTGTCCGTGACGAAGTAGCCCGTGGCCGGGCGATTATTCCGGCCAACA TCAATCACCCCGAAGCGGAGCCTATGATCATTGGTCGCAACTTTTTGGTGAAGGTGAACGCCAATATCGGCAACTCGGCC GTGACCTCATCCATCGAAGAAGAGGTGGAAAAGCTGGTGTGGTCCACCCGCTGGGGCGCAGATACCGTGATGGACCTGTC CACCGGCCGTTATATTCACGAAACCCGCGAATGGATTGTGCGTAACTCACCGGTGCCTATTGGCACTGTGCCGATTTATC AGGCGCTGGAGAAGGTCAACGGCATCGCCGAAGATCTTAACTGGGAAGTATTCCGCGACACCCTGATTGAACAGGCCGAG CAGGGGGTGGATTACTTCACCATCCACGCGGGCGTGCTGCTTCGCTACGTGCCCATGACTGCAAAACGGGTTACCGGCAT AGTGTCCCGCGGCGGCTCCATCATGGCCAAATGGTGCTTAAGCCACCATCAGGAAAACTTCCTCTACACCCATTTTCGCG ATATTTGCGAGCTTTGCGCCGCCTATGATGTGTCGTTGTCGCTCGGCGACGGTATGCGTCCGGGCTCCATTGCCGATGCC AATGACGAAGCCCAGTTTGCTGAGCTCGAAACCCTGGGGGAGCTGGTAAAAATCGCCTGGGAATACGATGTGCAGACCAT CATTGAAGGTCCGGGCCACATCCCCATGCAGCTCATCAAAGAGAACATGGATAAGCAGCTTGAGCACTGCGCAGAGGCGC CGTTTTATACCCTGGGCCCGCAAACCACCGACATTGCCCCAGGCTACGATCACTTCACCTCCGGTATTGGGGCGGCCATG ATTGCCTGGTATGGCTGCGCCATGCTTTGTTACGTCACGCCGAAAGAACATTTGGGCCTGCCGAACAAGGAAGATGTAAA ACAAGGGCTTATTGCTTACAAGATTGCCGCCCACGCTGCCGATGTCGCCAAGGGACATCCCGGCGCGCAAATCCGCGACA ATGCGCTGTCCAAGGCACGATTCGAGTTTCGCTGGGAGGATCAGTACAACCTCGGGCTGGATCCCGATACTGCCCGTGCC TATCACGACGAAACTCTGCCGCAGGAGTCGGCCAAGGTGGCCCATTTTTGCTCCATGTGCGGCCCCAAGTTCTGCTCGAT GAAAATCACCCAGGATGTACGCGACTATGCGGCCAGTCTGGAGAATGCTGCCCGCAGCGAGGCTGACAGCGTACAGACCC TTGAAGTGGGGGCGGCCGAAAGCTATTCCAAGGCAGAAAGCTACGCCAGGGCGGGTATGGACAAGATGTCGGCCACCTTT AAACAGACAGGCAGTGCGCTTTACAGCGAGACTCATGTGGAAGCGGCCCTGAGCACCGAAAAGGAACCGGTGTAG Protein sequence : MSNRRETRKAAQDFIDNLKPLRRPNSEKIFIEGSRPDIQVGMRQIHQTDTRIVNTRGEETFEANPPIKVYDCAGPYSDPN ADINVRRGLPKLREGWILARSDTEELNSASSNFTQQRLADDGLDHLRFDVLPKPRRAKAGKRVTQLHYARQGIITPEMEY IAIRENMARDEVTDEQLNRKKPGEAFGALVSKPITPEFVRDEVARGRAIIPANINHPEAEPMIIGRNFLVKVNANIGNSA VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIVRNSPVPIGTVPIYQALEKVNGIAEDLNWEVFRDTLIEQAE QGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLSHHQENFLYTHFRDICELCAAYDVSLSLGDGMRPGSIADA NDEAQFAELETLGELVKIAWEYDVQTIIEGPGHIPMQLIKENMDKQLEHCAEAPFYTLGPQTTDIAPGYDHFTSGIGAAM IAWYGCAMLCYVTPKEHLGLPNKEDVKQGLIAYKIAAHAADVAKGHPGAQIRDNALSKARFEFRWEDQYNLGLDPDTARA YHDETLPQESAKVAHFCSMCGPKFCSMKITQDVRDYAASLENAARSEADSVQTLEVGAAESYSKAESYARAGMDKMSATF KQTGSALYSETHVEAALSTEKEPV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 72 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 72 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 0.0 | 71 |
