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Name : Sama_1776 (Sama_1776) Accession : YP_927651.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 2171156 - 2172442 bp Length : 1287 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATACCAAATATCTCCGTAATGAACTGGAATTCACCAAAGAGCGTCTGGCCGCACGCGGCTTCGCGCTGGACAT CGATCATCTCAAAGCGCTGGAAGAAAAGCGCAAGTCGCTGCAGGTCGCCACTGAAGAGCTGCAGGCCAGTCGCAACGCAA TTTCCAAATCCATCGGTCAGGCAAAGTCCCGTGGTGAAGACGTCGCGCCCATCATGGCTCAGGTAGGTAACCTGGGTACC GAGCTTGAGGCCAAAAAAATCGAATTGGCAGCGCTGCTGGAAGAAATCAACGCCATTGCCATGTCAGTGCCCAACCTGCC TGATGAGTCAGTGCCTGTTGGGAAAGACGAAAGTGAAAACGTTGAAATTCGCCGTTGGGGCGAGCCACGCAGCTTTGATT TTGCAGTTAAAGATCATGTGGATCTGGGTGAAACCCTGGGTGGTTTGGATTTCAAGAGCGCGGTTAAGATCACCGGCTCA CGCTTTATCGTTATGAAAGGCCAGATTGCCCGCATGCACCGCGCACTGGCGCAGTTTATGCTGGATCTGCATACCATTGA GCACGGTTATACTGAGGCCTATGTGCCTTTGCTGGTAAACACAGACAGTTTACTGGGTACTGGTCAGTTACCCAAGTTCA GTGAAGACCTGTTCAACCTCAAGCCTGCGACCGAAGAAGGTCAGGCACTGAGCCTGATCCCAACGGCAGAAGTACCAGTG ACCAACCTGGTGCGTGATACCATCCTTGATGAGGCCGACCTGCCTATCAAGATTACCGCACACACGGCATGCTTCCGCTC CGAAGCCGGTTCATACGGTAAAGATACCCGTGGTCTTATCCGTCAGCACCAGTTCGACAAAGTGGAAATGGTGCAGATAG TTAAGCCCGAAAACTCCATGGATGCCCTTGAGCAAATGGTTGGCCACGCCGAAAACGTACTGAAAAAGCTGGGTCTGCCA TACCGCACAGTGGTGCTTTGCACCGGCGACATGGGCTTTGGTGCCGCCAAGACCTACGACATTGAAGTATGGCTGCCTGC GCAGAACACCTATCGTGAAATCTCTTCGTGCTCTAACGTGAAGGATTTCCAGGCCCGCCGTATGCAAGCCCGCTATCGCA GCAAAGAAGACAACAAGCCTGCACTGGTTCACACCCTCAATGGTTCAGGTCTTGCGGTAGGTCGTACTCTGGTAGCGATT CTGGAGAACTATCAGAATGCCGATGGTACAGTTACCGTGCCTGAAGCCCTGCGCCCATATATGGGTGGTATTGAGCAACT CGGTTAA Protein sequence : MLDTKYLRNELEFTKERLAARGFALDIDHLKALEEKRKSLQVATEELQASRNAISKSIGQAKSRGEDVAPIMAQVGNLGT ELEAKKIELAALLEEINAIAMSVPNLPDESVPVGKDESENVEIRRWGEPRSFDFAVKDHVDLGETLGGLDFKSAVKITGS RFIVMKGQIARMHRALAQFMLDLHTIEHGYTEAYVPLLVNTDSLLGTGQLPKFSEDLFNLKPATEEGQALSLIPTAEVPV TNLVRDTILDEADLPIKITAHTACFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVKPENSMDALEQMVGHAENVLKKLGLP YRTVVLCTGDMGFGAAKTYDIEVWLPAQNTYREISSCSNVKDFQARRMQARYRSKEDNKPALVHTLNGSGLAVGRTLVAI LENYQNADGTVTVPEALRPYMGGIEQLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-108 | 58 |
