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Name : Sama_0170 (Sama_0170) Accession : YP_926051.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 200369 - 201931 bp Length : 1563 bp Strand : + Note : KEGG: son:SO0167 general secretion pathway protein E DNA sequence : ATGAGTGACATCAATCAGGGCGAAGTGCTGGAACGCCTGTCCGATGAACTTGGCGTAGAGGCCGAGACCCAGGTAGACGA GGCGTTTCGCTCCAATAGCCGCGAGCGACTGCCCTTTGCCTTTGCCCACCGTTTTGGCTTGGTGCTCGCCAAAGACGAAC AGGGTGTGCTGGGGCTGTATTACACAGACAAAACACCGCTGGCCGCCTTGTTGGAAGTGCGCCGCTACGCCGGTGAAGCC GTGCCATTGCAACGACTGGAAGCTTCGGCCTTCGAGGCCAGACTGACCCAGGCGTATCAGGCCAATTCTTCTGAAGCGCA GCAGCTGATGGAAGATATTGGCAATGAGATGGACCTCTTCACCCTGGCCGAAGAGCTGCCTCAGACCGAAGATCTGCTGG AAGGCGACGATGATGCGCCCATTATCCGGCTTATCAACGCGCTCCTGTCGGAAGCCATTAAAGAAGAGGCGTCGGACATC CACATCGAGACTTACGAGAAGCAGCTCGTGGTGCGTTTCCGGGTGGATGGGGTGCTCAAAGAAGTGCTCAAACCCAACCG TAAGCTTTCGTCACTGCTGGTCAGCCGTATCAAGGTAATGGCTCGTCTGGACATCGCAGAAAAACGCGTGCCACAGGATG GCCGTATCTCATTGCGTATCGGTGGCCGAGCCGTGGATGTGCGGGTGTCGACCATGCCATCGAGCCACGGTGAACGGGTG GTACTGCGTCTGCTCGATAAAAATGCCGGTAATCTGGATTTGGCTCAGCTTGGGATGACTGAAACCATTCGCGAGCAATT CGATGAGCTTATCCGCAAGCCCCACGGTATCCTGCTGGTGACTGGTCCTACAGGTTCGGGTAAGAGTACGACTCTCTACG CGGGCCTCACCGAAATCAATTCCCGTGACACCAACATTCTCACGGTGGAAGACCCCATCGAATATGAGCTCGAAGGTATA GGTCAAACCCAGGTCAACACCAAGGTCGACATGACTTTTGCCCGCGGCCTGCGTGCCATTTTGCGTCAGGACCCTGATGT GGTGATGATTGGGGAAATCCGGGACCTGGAAACGGCTCAAATCGCGGTGCAGGCGTCCCTTACGGGTCACCTGGTGATTT CTACTCTGCACACCAACACTGCATCCGGTGCTATTACTCGATTGCAGGATATGGGGGTTGAGCCCTTCCTGGTGTCGTCC AGTTTGCTCGGTGTATTGGCCCAGCGACTGGTACGGACCCTGTGCCCAAGCTGTAAGGCGCCCCATGTGCCCGATGAGCG AGAGCGTGAACTGCTGGGTATTGGCGGTGGTGATGCGGTTATCTACCGCGCCACCGGCTGTAAGGCCTGTGGCCATAATG GTTATCGCGGTCGTACCGGTATCCACGAGCTGCTGTTGGTGGATGACACTGTGCGTGAACTTATCCATGGTGGCAGGGGC GAGCTGGCGATTGAGAAATACATTCGTCAATCGGTTCCCAGCATTCGCCACGATGGTATGCAAAAGGTCCTGGCGGGCAT TACCACCCTCGAAGAAGTACTGCGGGTGACCCGCGAGGAGTAA Protein sequence : MSDINQGEVLERLSDELGVEAETQVDEAFRSNSRERLPFAFAHRFGLVLAKDEQGVLGLYYTDKTPLAALLEVRRYAGEA VPLQRLEASAFEARLTQAYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIRLINALLSEAIKEEASDI HIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERV VLRLLDKNAGNLDLAQLGMTETIREQFDELIRKPHGILLVTGPTGSGKSTTLYAGLTEINSRDTNILTVEDPIEYELEGI GQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSS SLLGVLAQRLVRTLCPSCKAPHVPDERERELLGIGGGDAVIYRATGCKACGHNGYRGRTGIHELLLVDDTVRELIHGGRG ELAIEKYIRQSVPSIRHDGMQKVLAGITTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-154 | 66 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-154 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sama_0170 | YP_926051.1 | general secretion pathway protein E | VFG0182 | Protein | 6e-150 | 67 |
| Sama_0170 | YP_926051.1 | general secretion pathway protein E | VFG2048 | Protein | 2e-154 | 66 |
| Sama_0170 | YP_926051.1 | general secretion pathway protein E | VFG1876 | Protein | 1e-136 | 58 |
| Sama_0170 | YP_926051.1 | general secretion pathway protein E | VFG2426 | Protein | 1e-75 | 46 |
