Gene Information

Name : Sama_1355 (Sama_1355)
Accession : YP_927232.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Unknown
Product : phage integrase family site specific recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1643758 - 1644714 bp
Length : 957 bp
Strand : +
Note : KEGG: son:SO2037 site-specific recombinase, phage integrase family

DNA sequence : 
ATGACACACAGTCCCTTCCTGAATGCTGTCCGCGACAGTATACGTTTGAGAGGCTACAGCTTGCGCACGGAGAAAACTTA
CCTTCATTGGATTAAGTTTTACATTCTTTTCAATCAAAAACGCCATCCTGACACTATGGGCAGCGCGGAAATTACCGCGT
TTTTAACCTATCTTGCTGTAGAGCGCCATGTGGCCGCGAATACCCAAAAAGTGGCCTTAAATGCGTTGATCTATCTGTAT
CAAAAGTTTTTACAGATTGAGCTTGGCGAGTTGCCTTTTTCATTGGCCACCAAGCAGCGTTCTTTGCCCATCGTCGTCAC
ACAGACAGAGGTCGCACATATCCTCGCTAAACTGAGTGGGGTTCACTTACATGTGATTCAAATGCTCTACGGCAGTGGGC
TCAGAGTGACAGAATGTCTCAGGCTTAGGGTGCAGGATGTCGACTTGGAGCGGTTATCTGTGACCGTGCATGACGGTAAA
GGGAATAAGGACCGCCAAACGTTGCTCAGCCGAAGTTGCCTGAATTGGTTACCGGATCAAATTGAACATAGTCTGAATAT
CCAGCAAAAAGACAATCAACGTGGTATTGGACCATCGATGCCTACAGCACTTTCGGTAAAGTACCCGAATGCCTTTCGCG
AACCTGGCTGGATGTATTTGTTTCCGAGTAGTGGATTATGCCCTCATCCTATCACCGGTGAAATTTGCCGCCATCATCTT
CACGACAGTGCGATTCGCAAAGCGTTGAGAATCGCGGTGCGTCATGCTGGGGTGCGCAAAAAGGTGAATTGCCATACTTT
CCGTCATTCCTTCGCTACTCACTTGCTGCAGGCCGGATACGATATCCGTACTGTGCAGGAGTTATTGGGCCATAACGATG
TAAAGACAACCCAGATTTACACCCACGTACTGGGCCAGCATTACGCCGGAACAGTCAGCCCCCTTGATCGGTTGTGA

Protein sequence : 
MTHSPFLNAVRDSIRLRGYSLRTEKTYLHWIKFYILFNQKRHPDTMGSAEITAFLTYLAVERHVAANTQKVALNALIYLY
QKFLQIELGELPFSLATKQRSLPIVVTQTEVAHILAKLSGVHLHVIQMLYGSGLRVTECLRLRVQDVDLERLSVTVHDGK
GNKDRQTLLSRSCLNWLPDQIEHSLNIQQKDNQRGIGPSMPTALSVKYPNAFREPGWMYLFPSSGLCPHPITGEICRHHL
HDSAIRKALRIAVRHAGVRKKVNCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHVLGQHYAGTVSPLDRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 1e-58 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-59 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 6e-59 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 1e-58 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 6e-59 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 1e-58 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 6e-59 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 6e-59 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 1e-58 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-59 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 1e-58 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 8e-59 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 1e-58 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 8e-59 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-59 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 1e-58 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 8e-59 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 6e-59 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 1e-58 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 8e-59 45
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-41 44
int1 YP_005160012.1 integrase Not tested Not named Protein 3e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_1355 YP_927232.1 phage integrase family site specific recombinase VFG1028 Protein 3e-59 45