Gene Information

Name : Sama_1333 (Sama_1333)
Accession : YP_927210.1
Strain : Shewanella amazonensis SB2B
Genome accession: NC_008700
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1624715 - 1625404 bp
Length : 690 bp
Strand : +
Note : KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD

DNA sequence : 
ATGCAAGACATACTGCTTAAGGTCGAAAACGTCAGCAAAACCTATCGGGAAGGCAAACTGGAAACCCAGGTGCTGTGCGG
GGTGGATCTTTCGGTATACCGCGGCGAGCAATTGGCCATTGTGGGCGGCTCTGGCTCGGGTAAAAGTACGCTGCTGCACA
TCATGGGCTCTCTGGATAAACCCACCAGTGGCAAGGTGCTGCTGGAAGGTGAAGATCTGTACAGCTTGAGTGCGGCACGC
CAGGCGCAAATCCGAAACGCCAGCCTCGGCTTTATCTATCAGTTTCATCATTTGTTGCCCGAATTCAGCGCACTGGAGAA
TGTGGCCATGCCGGCTCGTATCGCCGGAGTGGATAAAAAAACCGCCTTTGGCCGCGCAGAAGCCCTGCTGGAGCGGGTTG
GTCTGAGTCACAGGCTGTCCCACGCGCCCTCAGAGCTTTCCGGTGGTGAGCGTCAGCGTGTAGCCATTGCCAGGGCGCTA
ATCAATCAGCCCAGGCTGGTGCTGGCTGATGAACCCACGGGTAACCTGGATGCCGCCAGCGGTGAAGCCGTATATGCCCT
TATTCGCGAGCTGGCAGCCCAGCTTGGCACCGCCTTCGTGGTGGTGACCCACGACAATGCGCTGGCCGCGCGCATGGACA
GGCAGTTATCGATGAAAAGCGGCAAATTAACCACCGGAGCCCGCCAATGA

Protein sequence : 
MQDILLKVENVSKTYREGKLETQVLCGVDLSVYRGEQLAIVGGSGSGKSTLLHIMGSLDKPTSGKVLLEGEDLYSLSAAR
QAQIRNASLGFIYQFHHLLPEFSALENVAMPARIAGVDKKTAFGRAEALLERVGLSHRLSHAPSELSGGERQRVAIARAL
INQPRLVLADEPTGNLDAASGEAVYALIRELAAQLGTAFVVVTHDNALAARMDRQLSMKSGKLTTGARQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sama_1333 YP_927210.1 lipoprotein releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 9e-34 45
Sama_1333 YP_927210.1 lipoprotein releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 4e-39 44
Sama_1333 YP_927210.1 lipoprotein releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 5e-37 42