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Name : Sama_1045 (Sama_1045) Accession : YP_926922.1 Strain : Shewanella amazonensis SB2B Genome accession: NC_008700 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1262651 - 1265215 bp Length : 2565 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGAACAGCACAGACCTGCTTGATCTCGAAAAACATACCCCCATGATGCGTCAATACCTGACCATGAAGGCAGCACACCC GGATATGTTGCTGTTTTATCGCATGGGCGACTTTTATGAACTCTTTTATGATGATGCCAAGCGTGCCTCAGAAATGCTGT CCATCTCACTGACCGCACGTGGCAAAAGCGGCGGGGATCCCATTCCCATGGCAGGTATCCCCTATCATGCGGTGGAAGGC TATCTGGCCAAGTTGGTGCAACTTGGGCAATCCGTTGCCATTTGTGAGCAAATAGGCGATCCGGCCACCGCAAAAGGTCC GGTAGAGAGAAAAGTCGTTCGTGTTGTGACGCCGGGTACCCTTACCGATGAGGCCCTTCTCCAGGAACGGCAGGACAATC TGCTGGCGGCAGTTTACCAGGGCAAGGTGGGTTATGGTTTTGCCACTCTGGATGTAGCATCCGGCCGCTTTGTGATTGCC GAATTGCCAAGCCGTGAAGCGCTGGAAGCCGAGCTGCAGCGAACCAGTCCAGCCGAGCTGTTATACAGTGAAGACTTCGG CGATATGGGGCTGATTAATCATATCAGGGGAAAGCGACGCCGCCCCGAGTGGGAGTTTGACTACGATACCTGCATCAAGA TGTTGCTTGAGCAGTTCGGCACCCGCGACTTGCGCGGCTTTGGCATTGCCGATGCCCGTCTGTCGCTGCAGGCGGCCGGC TGTTTGATGCAATATGTGAAAGATACCCAGCGCACTGCCCTGCCCCATATCAATTCCATCGTACGCTTCAATCAGGGAGA CAGCATCATTCTGGATGCCGCCACCCGACGTAATCTGGAGCTTACTGTCAGCCTGTCAGGTTCCCGCGAGAACACCCTTG CCAGCGTACTGGATAATACCGTCACCGCCATGGGCAGTCGTATGCTGCAGCGCTGGATCCACCAGCCATTGCGCTGTCAC GATACAATTCGGGGTCGCCAGCAGGCGGTCCAGGAATTATTGGAGACCGGCCTTTACGAGGACCTTCGCGCAGAGCTTAA AGCCCTGGGGGATATAGAGCGTATTCTGGCGCGTCTAGCTCTTCGAAGCGCCCGCCCGAGAGACTTTGCCAGATTAAGGG ATGCCCTCGGGATTCTGCCGCTTATCCGTGAGCGACTACAGCGGTGTGACGCGCGACATCTGAAGTCACTCAATATTCTT CTGGGTGACTTTCCCGAAGAGTATGAGCTGCTGTGCCGTGCAATAGTCGATAACCCACCGGTACTCATCCGTGATGGCGG TGTCATTCGCGAAGGCTATGACAGCGAACTCGATGAATGGCGCAAGCTCAGTGATGGTGGCATAGATTATCTGGAGCAGA TGGAGCTGCGCGAAAAAGAGCGCACCGGTATTGCCACACTCAAAGTCGGCTTTAACCGGGTACATGGCTACTACATTGAA GTCAGCCGCGCCCAATCGGCACTGGTGCCCATCGCCTATCAGCGCCGCCAGACCCTTAAAAACACTGAGCGCTATATCAC CCCGGAGCTGAAAGAATACGAAGAGAAAGTGCTGTCCAGTCAGGGTAAGGCACTGGCGCTTGAAAAACAGCTTTGGGAAG AGCTGTTTGATTTGATACTGCCCAAGCTGCAGGAATTGCAGGACTTTGCCCTCGCCGCCTCCGAACTCGACGTGCTGGCA AACTTCGCCGATAGGGCCGATCTCTTCAATTATCACTGTCCCGAGCTCAGCGACACCACAGGCATCTTGATTGAAGCGGG TCGTCACCCTGTGGTTGAGCGGGTCAGCCAAAGCCCCTTCATCCCTAACCCGGTGGAACTATCCAATCACCGCCGCATGT TGATTGTGACCGGCCCCAACATGGGCGGTAAATCCACTTATATGCGTCAGGTCGCTCTCATTACCCTGATGGCCCATATT GGCAGTTTTGTACCCGCAGAGCGCGCTCTGATAGGACCGGTGGACAGAATATTTACCCGCATCGGTGCCAGCGATGACCT GGCTTCCGGCCGTTCCACCTTTATGGTGGAAATGACTGAAACCGCCAACATTCTGCATAACGCGACAGCCAACAGCCTGG TGTTGATGGATGAAATTGGCCGCGGTACTTCGACCTATGATGGTATGTCGCTGGCTTGGTCGGCCGCAGAATATCTGGCA CAAAAACTCGGTGCCATGACCTTATTTGCCACCCACTATTTTGAGTTGACCCAACTGCCGGAGATGCTCCCCGGGGTGCA CAATGTGCATCTGGATGCGATTGAACATGATGACACTATCGCCTTTATGCACGCAGTACAGGAAGGCGCCGCCAGTAAGA GCTATGGGTTGCAGGTAGCCGCTCTTGCAGGGGTTCCTGCAAACGTCATCAAGGCTGCCAAACACAAGCTGCTCCAACTG GAAAGCCGCGACCACGGCGTCGATATGAGCAAACAGCAAGCGTTGCCATTGACTATGACACCTGAGCCTTCCGCAGCAGA ATTACGTCTTGAAGCAATAGATCCGAACGATTTAAGTCCGCGTCAGGCGCTGGAACTTCTGTTCGAGTTAAAACGTCTAC TTTAG Protein sequence : MNSTDLLDLEKHTPMMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGDPIPMAGIPYHAVEG YLAKLVQLGQSVAICEQIGDPATAKGPVERKVVRVVTPGTLTDEALLQERQDNLLAAVYQGKVGYGFATLDVASGRFVIA ELPSREALEAELQRTSPAELLYSEDFGDMGLINHIRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIADARLSLQAAG CLMQYVKDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRENTLASVLDNTVTAMGSRMLQRWIHQPLRCH DTIRGRQQAVQELLETGLYEDLRAELKALGDIERILARLALRSARPRDFARLRDALGILPLIRERLQRCDARHLKSLNIL LGDFPEEYELLCRAIVDNPPVLIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATLKVGFNRVHGYYIE VSRAQSALVPIAYQRRQTLKNTERYITPELKEYEEKVLSSQGKALALEKQLWEELFDLILPKLQELQDFALAASELDVLA NFADRADLFNYHCPELSDTTGILIEAGRHPVVERVSQSPFIPNPVELSNHRRMLIVTGPNMGGKSTYMRQVALITLMAHI GSFVPAERALIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTSTYDGMSLAWSAAEYLA QKLGAMTLFATHYFELTQLPEMLPGVHNVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQL ESRDHGVDMSKQQALPLTMTPEPSAAELRLEAIDPNDLSPRQALELLFELKRLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sama_1045 | YP_926922.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 67 |
