Gene Information

Name : fliP (Noca_0743)
Accession : YP_921955.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 792128 - 792928 bp
Length : 801 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
GTGAGCGCCCGCCTGCGGCGCGCCCTCCTGCTCGTCGTCCTCACGCTCGGCGCCACCCTGGGAGCCGTGGCCGCGGCACC
CGGGGCGTACGCCGCCCCCAACGGCCCCAACGGCCCCGACGGACCTGCCGGCGGCAACGGTGTGACCGTCGACCTCGGCG
GTCTCACCGACAGCCCGAGCACGTCGGTGACGGTGCTGATCGGCCTCACGCTCATCTCGCTGCTGCCTGCGATCCTGCTC
AGCTGCACGGCGTTCACCAAGATCTTCGTGGTGCTCGGCCTGACCCGCAACGCGCTCGGGCTCCAGCAGACGCCGCCGAA
CCAGGTGCTGGCGGGTCTCGCACTGTTCCTCAGCCTCTTCGTGATGGGCCCGGTGCTGTCCGACATCAACGAGGTCGGGC
TCCAGCCCTACCTCAACGGGGACAAGACGACCTCGGTCGCCATCCAGGACGGCATCGAGCCGCTGCGCGACTTCATGCTC
GACAACACCGACGACGACGAGCTGATGCTGCTCACCAACGTCGCCGGCCGCGACCTGCCCGAGGACCGGGCCGACGTGTC
CACGGCGACGCTGATCCCGGCGTTCGTGCTGACCGAGCTCAAGCAGGCCTTCATCATCGGGTTCATCATCTTCATCCCGT
TCCTCGTCATCGACCTCGTGGTCAGCGGCGCCCTGATGGCCCTCGGCATGATGATGATGCCGCCCGTGATGGTGTCGCTG
CCGTTCAAGCTCTTGCTGTTCGTGCTCGTCGACGGCTGGGCCCTGGTCATCAAGTCGCTCGTCGCGAGCTATACCGGCTA
G

Protein sequence : 
MSARLRRALLLVVLTLGATLGAVAAAPGAYAAPNGPNGPDGPAGGNGVTVDLGGLTDSPSTSVTVLIGLTLISLLPAILL
SCTAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALFLSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIEPLRDFML
DNTDDDELMLLTNVAGRDLPEDRADVSTATLIPAFVLTELKQAFIIGFIIFIPFLVIDLVVSGALMALGMMMMPPVMVSL
PFKLLLFVLVDGWALVIKSLVASYTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-16 48
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-16 48
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-16 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-12 48
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-12 48
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-15 47
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-19 47
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-19 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-18 47
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-19 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-19 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-17 46
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-19 46
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-19 46
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-19 46
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-19 46
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-16 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-16 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-16 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-16 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-16 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-15 46
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-16 44
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG0188 Protein 7e-16 43
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG0519 Protein 7e-17 43
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG1773 Protein 5e-14 43
fliP YP_921955.1 flagellar biosynthesis protein FliP VFG2455 Protein 5e-10 41