Gene Information

Name : Noca_4519 (Noca_4519)
Accession : YP_925703.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4778373 - 4779077 bp
Length : 705 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa49640 putative two-component system response regulator

DNA sequence : 
GTGACCACGCCCACTGCTCCCCGGCCGCGTGTGCTCGTCGTCGACGACGACAAGGCCGTGCGCGAGTCACTGCGGCGGTC
GCTGGAGTTCAACGGCTACGAGGTCGTGCTCGCGGCCGACGGCGCCGAGGCGCTGGCCGGCATCTCCGCCGCCGCCCCGG
ACGTGGTCGTGATGGACGTGATGATGCCCCGCCTCGACGGGCTGGAGACCACCCGGGCGCTGCGCACCGCCGGCAACGAC
CTGCCGATCCTGGTGCTCACCGCCCGCGACGCGGTGGGCGACCGGGTCGAGGGCCTCGACGCCGGCGCGGACGACTACCT
CACCAAGCCCTTCGCCCTCCAGGAGCTGCTGGCCCGGCTGCGGGCCCTGCTCCGGCGGGTGGTCCCGCACGAGGACGCCA
CCGACGAGATGCTCTCCTTCTCGGACCTGTCGATGGACGTCGGCACCCGTGAGGTCCGCCGCGGCGAGCGGGTGATCGAG
CTGACCCGCACCGAGTTCGCGCTGCTGGAGATGTTCCTGCGCCGGCCGCGCCGGGTGCTGGAGCGCTCCTTCATCCTCGA
GGAGGTGTGGGGCTACGACTTCCCGACGACCGCGAACTCCCTCGAGGTGTACGTCGGCTACCTGCGCCGCAAGACCGAGG
CGGAGGGCGAGGCGCGGCTGATCCACACCGTCCGCGGCGTGGGCTACGTGCTGAAGGAATCGTGA

Protein sequence : 
MTTPTAPRPRVLVVDDDKAVRESLRRSLEFNGYEVVLAADGAEALAGISAAAPDVVVMDVMMPRLDGLETTRALRTAGND
LPILVLTARDAVGDRVEGLDAGADDYLTKPFALQELLARLRALLRRVVPHEDATDEMLSFSDLSMDVGTREVRRGERVIE
LTRTEFALLEMFLRRPRRVLERSFILEEVWGYDFPTTANSLEVYVGYLRRKTEAEGEARLIHTVRGVGYVLKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-21 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_4519 YP_925703.1 response regulator receiver BAC0083 Protein 8e-26 52
Noca_4519 YP_925703.1 response regulator receiver BAC0638 Protein 3e-17 48
Noca_4519 YP_925703.1 response regulator receiver HE999704.1.gene1528. Protein 4e-25 46
Noca_4519 YP_925703.1 response regulator receiver BAC0347 Protein 2e-20 46
Noca_4519 YP_925703.1 response regulator receiver BAC0308 Protein 1e-22 46
Noca_4519 YP_925703.1 response regulator receiver BAC0125 Protein 4e-22 45
Noca_4519 YP_925703.1 response regulator receiver NC_002516.2.879194.p Protein 8e-16 43
Noca_4519 YP_925703.1 response regulator receiver BAC0111 Protein 2e-23 42
Noca_4519 YP_925703.1 response regulator receiver AE000516.2.gene3505. Protein 9e-23 42
Noca_4519 YP_925703.1 response regulator receiver AE016830.1.gene1681. Protein 5e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_4519 YP_925703.1 response regulator receiver VFG1390 Protein 2e-55 73
Noca_4519 YP_925703.1 response regulator receiver VFG1389 Protein 2e-32 50
Noca_4519 YP_925703.1 response regulator receiver VFG1386 Protein 9e-32 48
Noca_4519 YP_925703.1 response regulator receiver VFG0596 Protein 2e-21 47