Gene Information

Name : Noca_4046 (Noca_4046)
Accession : YP_925230.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4269344 - 4270021 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO4230 putative response regulator

DNA sequence : 
GTGACCCGCGTACTCGTCGTCGAGGACGAAGAGAGCTACAGCGACGCTCTCGCCTACATGCTGCGCAAGGAGGGGTACGA
GGTCGCCATCGCCGCCAACGGCAACGACGCCCTCACCGAGTTCGACCGCAACGGCGCCGACATCGTGCTGCTCGACCTGA
TGCTCCCGGGGCTGCCCGGCACCGAGGTATGCCGCCAGATCCGGCAGACCTCGAGCGTGCCGGTGATCATGGTCAGCGCC
AAGGACGACGAGGTCGACAAGGTCGTCGGCCTCGAGCTGGGCGCCGACGACTACGTCACCAAGCCGTACTCGCCACGCGA
GCTGGTGGCCCGGATCCGCGCCGTGCTCCGCCGCGGGCAGGAGCCCGACCTCGCCCCGCCGACCCTCGAGGCCGGCCCGG
TCCGGATGGACGTCGAGCGGCACGTGGTGACCGTGGACGGCCAGGCCCAGCGGCTGCCGCTCAAGGAGTTCGAGCTGCTG
GAGATGTTCCTGCGCAACCCCGGCCGGGTGCTCACCCGCGGCCAGCTCATCGACCGGGTCTGGGGCTCCGACTACGTCGG
CGACACCAAGACCCTCGACGTCCACGTCAAGCGGCTGCGCGCCAAGATCGAGCCCGACCCCGGCGAGCCGAGGTACCTGG
TCACCGTCCGCGGCCTGGGCTACAAGTTCGACGTCTGA

Protein sequence : 
MTRVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPGTEVCRQIRQTSSVPVIMVSA
KDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQEPDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELL
EMFLRNPGRVLTRGQLIDRVWGSDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKFDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-38 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_4046 YP_925230.1 response regulator receiver NC_012469.1.7685629. Protein 1e-50 50
Noca_4046 YP_925230.1 response regulator receiver AE000516.2.gene3505. Protein 5e-43 48
Noca_4046 YP_925230.1 response regulator receiver NC_012469.1.7686381. Protein 3e-46 46
Noca_4046 YP_925230.1 response regulator receiver AE016830.1.gene1681. Protein 6e-48 44
Noca_4046 YP_925230.1 response regulator receiver HE999704.1.gene2815. Protein 5e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_002952.2859905.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_007622.3794472.p0 Protein 9e-46 44
Noca_4046 YP_925230.1 response regulator receiver NC_002745.1124361.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_009782.5559369.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_002951.3237708.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_003923.1003749.p0 Protein 9e-46 44
Noca_4046 YP_925230.1 response regulator receiver NC_002758.1121668.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_009641.5332272.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_013450.8614421.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver NC_007793.3914279.p0 Protein 1e-45 44
Noca_4046 YP_925230.1 response regulator receiver AE015929.1.gene1106. Protein 4e-33 41
Noca_4046 YP_925230.1 response regulator receiver BAC0308 Protein 5e-34 41
Noca_4046 YP_925230.1 response regulator receiver BAC0125 Protein 2e-33 41
Noca_4046 YP_925230.1 response regulator receiver HE999704.1.gene1528. Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_4046 YP_925230.1 response regulator receiver VFG1563 Protein 3e-38 42
Noca_4046 YP_925230.1 response regulator receiver VFG1386 Protein 6e-33 42
Noca_4046 YP_925230.1 response regulator receiver VFG1390 Protein 1e-35 41
Noca_4046 YP_925230.1 response regulator receiver VFG1702 Protein 1e-37 41
Noca_4046 YP_925230.1 response regulator receiver VFG1389 Protein 1e-30 41