Gene Information

Name : Noca_3961 (Noca_3961)
Accession : YP_925145.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4175496 - 4176263 bp
Length : 768 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3089 putative ABC transporter ATP-binding protein

DNA sequence : 
ATGACCGAGGCCACCCTCCAGGGGACCCCCGTCCCTCCGGCAGCGCGCGTGCGCAACCTCACCAAGACCTACGGCTCCGG
CCCGGCGATGGTGGTCGCGCTCGACGACGTCAGCCTCGACCTCGCGGCCGGCGAGTTCACGGCGGTGATGGGCCCGAGCG
GCTCGGGCAAGTCCACGCTGATGCACTGCTGCGCGGCGCTGGACCGGGCCGACTCCGGCTCGGTGTTCATCGGCGACCAG
GACCTGACCACCCTCAAGGACAAGGCCCTCACCCGCCTGCGCCGCGACGAGATCGGCTTCGTCTTCCAGTCCTTCAACCT
GGTGCCGACCCTGTCTGCGGCCGAGAACATCGCGCTTCCGTTGGCGATCGCGGGCCGCCGCCCCGACCGCGAGTGGTACG
ACGCGGTCATCGACACGGTGAGCCTGTCCGATCGGCTCGACCACAAGCCCAACGAGCTCTCCGGGGGCCAGCAGCAGCGG
GTCGCGGTCGCCCGGGCGCTCGTCAGCAGGCCGCGGATCGTCTTCGCCGACGAGCCGACCGGCAACCTCGACTCCCGCTC
CGGCGCCGAGGTCCTCGAGCTGCTGCGCCGCAGCGTCGACGACTACGGCCAGACGGTCGTGATGGTGACCCACGACCCCG
TGGCCGCGGCGTACACCGACCGGGTCGTCTTCCTCGGTGACGGCCGGGTCGTCGACGAGCTGCGCGAGCCCACCCGCGAG
CGGGTACTCGAGGTCATGAACCGCCTGGCCGAGCAGCACGCCCGATGA

Protein sequence : 
MTEATLQGTPVPPAARVRNLTKTYGSGPAMVVALDDVSLDLAAGEFTAVMGPSGSGKSTLMHCCAALDRADSGSVFIGDQ
DLTTLKDKALTRLRRDEIGFVFQSFNLVPTLSAAENIALPLAIAGRRPDREWYDAVIDTVSLSDRLDHKPNELSGGQQQR
VAVARALVSRPRIVFADEPTGNLDSRSGAEVLELLRRSVDDYGQTVVMVTHDPVAAAYTDRVVFLGDGRVVDELREPTRE
RVLEVMNRLAEQHAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-39 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-41 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_3961 YP_925145.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-40 49
Noca_3961 YP_925145.1 ABC transporter-like protein CP001581.1.gene598.p Protein 3e-51 48
Noca_3961 YP_925145.1 ABC transporter-like protein CP001581.1.gene798.p Protein 4e-48 47
Noca_3961 YP_925145.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-45 43