Gene Information

Name : Noca_3782 (Noca_3782)
Accession : YP_924969.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4000718 - 4001611 bp
Length : 894 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro11203 response regulator, two-component system

DNA sequence : 
ATGGCGCCGTACGGTTCCTGTGAAGGTTCGGTCAAGATGCCGCCGTCAGGTCGGGATCTCGTTGAACCAGGCGCCACTGC
TGCCACGATGAACGTCGTGATCGAGAATGCAGACCGGCCCTCCTCCCGGACGGATCCCACGAGTGCCGGTGCAGGCGGAT
CCACAGCACCGGGGGCGGCACGGCCTGCCCTGCGCGCCATGGTCGTGGAGGACGAGGTCGAGCTCGCCGCCGTCGTGGGC
AGCTACCTGGAGCGGGCCGGGTACGAGGTCGCGCTGGCCCACGACGGACTGCGAGCGGTCGACCTCGCGCGTGAGGTCGA
TCCGGACGTCGTGATCCTCGATCTCGGACTCCCGGGCATCGACGGCATCGAGGTGTGCCGCCGGCTGCGCACCTTCAGCG
ACTGCTACGTCGTGATGCTCACCGCCCGCAGCGACGAGGTCGACATGCTGATCGGACTCTCCGTCGGCGCCGACGACTAC
ATGACCAAGCCGTTCAGTCCGCGCGAGCTCCTCGCCCGGCTGCAGGCCATCCTGCGCCGGCCACGACCGAAGACCGGCCA
GCGGGCCGACGTCGCAACGGCGGGCACGATCCTGACGTTCGGTGCGCTCTCCATCGACGTGGAGGCGCGCGAGGTCTGGC
TCCGCGACGAGCTGGTGCCCCTGACCCGCACCGAGTTCGACCTGCTCGCCACGCTCGCCGAGCGCCCCCGACTCGTGTTC
TCACGCCGCCAGCTCATCGATCGCGTCTGGGGGGAGGACTGGGTGGGCGACGAGCACCTGGTCGACGTCCACATCGGGCA
CCTGCGTCGCAAGCTGGACGACGACGCGAGCCGGGGCCAGTACCTGCGAACGGTCCGCGGTGTCGGCTACCGCATGGGCA
CCGGCGAGGAGTGA

Protein sequence : 
MAPYGSCEGSVKMPPSGRDLVEPGATAATMNVVIENADRPSSRTDPTSAGAGGSTAPGAARPALRAMVVEDEVELAAVVG
SYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDY
MTKPFSPRELLARLQAILRRPRPKTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVF
SRRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_3782 YP_924969.1 response regulator receiver HE999704.1.gene2815. Protein 8e-44 48
Noca_3782 YP_924969.1 response regulator receiver NC_002952.2859905.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_009782.5559369.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_002951.3237708.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_002758.1121668.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_007622.3794472.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_009641.5332272.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_013450.8614421.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_007793.3914279.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_003923.1003749.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver NC_002745.1124361.p0 Protein 2e-39 45
Noca_3782 YP_924969.1 response regulator receiver AE016830.1.gene1681. Protein 2e-41 45
Noca_3782 YP_924969.1 response regulator receiver NC_012469.1.7685629. Protein 4e-34 43
Noca_3782 YP_924969.1 response regulator receiver AE000516.2.gene3505. Protein 1e-34 43
Noca_3782 YP_924969.1 response regulator receiver CP000647.1.gene2531. Protein 2e-37 43
Noca_3782 YP_924969.1 response regulator receiver NC_012469.1.7686381. Protein 2e-39 42
Noca_3782 YP_924969.1 response regulator receiver CP001918.1.gene3444. Protein 9e-36 42
Noca_3782 YP_924969.1 response regulator receiver CP000034.1.gene2186. Protein 3e-36 41
Noca_3782 YP_924969.1 response regulator receiver NC_002695.1.916589.p Protein 2e-36 41
Noca_3782 YP_924969.1 response regulator receiver BAC0039 Protein 3e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_3782 YP_924969.1 response regulator receiver VFG1702 Protein 5e-30 41