Gene Information

Name : Noca_3020 (Noca_3020)
Accession : YP_924209.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : 2.7.1.40
Position : 3216553 - 3218016 bp
Length : 1464 bp
Strand : -
Note : PFAM: pyruvate kinase; KEGG: sma:SAV6217 putative pyruvate kinase

DNA sequence : 
GTGCGTAGAGCGAAGATCGTGTGCACCCTGGGCCCCGCGGTGGCGAACCCTCGACGGATCCGTGAACTGGTCTATGCCGG
CATGGACGTCGCCCGCCTGAACATGAGCCACGGCTCGCACGAGGACCATGCCGAGGCCTACCGCCTCGTGCGCGAGGCCT
CGGACGCGAGCGGCCACGGCGTCGGCATCTTCGCCGACCTGCAGGGCCCGAAGATCCGGCTCGAGCGGTTCGCGAACGGT
CCGGTCGTGCTGACCCGCGGGCAGGCGTGGACGATCACCACCCGCGACGTGCCCGGCGACGACCGCGAGTGCGGGACGAC
GTACAAGGGCCTGCCCGGCGACGTGAGCGTCGGCGACCCGATCCTCATCGACGACGGCAAGGTGCGGCTGCGGGTCACCA
AGGTCGACGGACCGGACGTGCACACCGAGGTGCTCGTGGGCGGCAAGGTCAGCGACAACAAGGGCATCAACCTGCCCGGC
GTCGCCGTGTCCGTGCCGGCGCTGTCGGAGAAGGACATCGAGGACCTGCGCTTCGCGCTGCACCTCACGGTCGACTTCAT
CGCGCTGAGCTTCGTACGCGACGCCAAGGACGTCGAGGACGTCCGGCGGATCATGGACGAGGAGGGCGTGCACCTCCCGG
TCATCGCGAAGATCGAGAAGCCGCAGGCGATCGAGAACCTCGACGAGGTGATCGCGGCGTTCGACGGCTTCATGGTCGCC
CGCGGCGACCTCGGCGTGGAGTGCCCGCTCGAGGACGTCCCGTTCCTGCAGAAGCGGATCGTCGAGAAGGCCCGCCTCAA
CGCCAAGCCCGTCATCGTCGCGACCCAGATGCTGGAGTCGATGATCGGCAACCCCGCGCCGACCCGCGCCGAGGCCTCCG
ACGTCGCGAACGCCGTCCTCGACGGCGCCGACGCGGTGATGCTGTCCGGCGAGACCAGCGTGGGGGAGTACCCCGTCCAC
ACCGTCGAGACGATGGCGCGGATCATCGCGGCGACCGAGGCGCACGCCCTGGCGCAGCCCCCGGGCCGGGCCGCCCTCGC
CGAGATCGACTGGGACCCGCACACCCGCGGCGGCGTGATCGCCAAGGCCGCCGAGGAGGTCGCCGAGCGGGTCGGGGCGA
AGTACGTCGTCGCCTTCACCCAGAGCGGTGACTCCGCGCGCCGGATGTCGCGGCTGCGTGGCCCGATCCCGATCCTCGCG
TTCACGCCGGTCGGGGTGGTGCGCTCGCAGCTCGCGCTGACCTGGGGGATCGAGACGTTCCTGACCCAGCCCGTCGAGCA
CACCGACGAGATGGTCCGTCAGGTCGACGACCAGCTGCTCCGGATCGGCCGGGTCCGCGAGGGTGACCTCGTGGTCATCA
TCGCGGGCGCCCCTCCGGGCATCCCCGGGTCGACGAACGCGCTGCGGATCCACCGGATGGGCGACGCGATCAACCAGGTC
GCGCCGGCGTACCGCCGCAGCTGA

Protein sequence : 
MRRAKIVCTLGPAVANPRRIRELVYAGMDVARLNMSHGSHEDHAEAYRLVREASDASGHGVGIFADLQGPKIRLERFANG
PVVLTRGQAWTITTRDVPGDDRECGTTYKGLPGDVSVGDPILIDDGKVRLRVTKVDGPDVHTEVLVGGKVSDNKGINLPG
VAVSVPALSEKDIEDLRFALHLTVDFIALSFVRDAKDVEDVRRIMDEEGVHLPVIAKIEKPQAIENLDEVIAAFDGFMVA
RGDLGVECPLEDVPFLQKRIVEKARLNAKPVIVATQMLESMIGNPAPTRAEASDVANAVLDGADAVMLSGETSVGEYPVH
TVETMARIIAATEAHALAQPPGRAALAEIDWDPHTRGGVIAKAAEEVAERVGAKYVVAFTQSGDSARRMSRLRGPIPILA
FTPVGVVRSQLALTWGIETFLTQPVEHTDEMVRQVDDQLLRIGRVREGDLVVIIAGAPPGIPGSTNALRIHRMGDAINQV
APAYRRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 1e-76 41
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 1e-76 41
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 2e-76 41
pykA NP_273151.1 pyruvate kinase Not tested IHT-A Protein 4e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_3020 YP_924209.1 pyruvate kinase VFG0479 Protein 5e-77 41