Gene Information

Name : Noca_2006 (Noca_2006)
Accession : YP_923203.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2148057 - 2148728 bp
Length : 672 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO2143 two component system response regulator

DNA sequence : 
GTGGCCAGGATCCTGATCGTCGAGGACGAGGAGCGGATCGCGTCGTTCCTGGCCAAGGGGCTGCGCGCCGACGGCCACGT
GACGACCTGCGTGGCGGACGGCCGTGAGGGGCTCGACCTGGCGCTCGGCGGCGACGTCGACCTGGTCGTGCTCGACATCG
GGCTGCCCGGGATGGACGGCTTCGAGGTGCTCGACCAGCTGCGCTCCCAGGGCTCCACGGTCCCGGTCATCGTGCTGACC
GCCCGCGACTCGGTCGGCGACACCGTCTCCGCGCTCGAGGGCGGCGCCGACGACTACATGCCCAAGCCGTTCCGCTTCGC
CGAGCTGCTCGCGAGGGTCCGGCTGCGGCTGCGGCAGAGCGCCGACGCGGGCGGGGCGTCGCGAGAGGACGTGCTGCAGT
CCGGCCGGGTCAAGCTGGACGTACGGACCCGGCGCGCCGTGGTCGAGGACCGGCAGGTCGACCTGTCGGCCCGGGAGTTC
TCGCTCGCGGAGATCTTCATGGTCAACGCCGGCCAGGTGCTCTCCCGCGAGCAGCTGCTCGACCACGTCTGGGGGATGGA
CTTCGACCCCGGCTCGAACGTGGTCGACGTGTACGTCGGCTATCTGCGCAAGAAGCTCGGCGCCGACACCATCGCCACCG
TCCGGGGCATGGGGTACCGCTTCAACCGCTGA

Protein sequence : 
MARILIVEDEERIASFLAKGLRADGHVTTCVADGREGLDLALGGDVDLVVLDIGLPGMDGFEVLDQLRSQGSTVPVIVLT
ARDSVGDTVSALEGGADDYMPKPFRFAELLARVRLRLRQSADAGGASREDVLQSGRVKLDVRTRRAVVEDRQVDLSAREF
SLAEIFMVNAGQVLSREQLLDHVWGMDFDPGSNVVDVYVGYLRKKLGADTIATVRGMGYRFNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_2006 YP_923203.1 response regulator receiver BAC0125 Protein 2e-26 45
Noca_2006 YP_923203.1 response regulator receiver BAC0197 Protein 6e-27 45
Noca_2006 YP_923203.1 response regulator receiver HE999704.1.gene1528. Protein 9e-26 44
Noca_2006 YP_923203.1 response regulator receiver AE015929.1.gene1106. Protein 2e-20 42
Noca_2006 YP_923203.1 response regulator receiver BAC0083 Protein 4e-29 42
Noca_2006 YP_923203.1 response regulator receiver BAC0308 Protein 3e-25 41
Noca_2006 YP_923203.1 response regulator receiver BAC0111 Protein 8e-26 41
Noca_2006 YP_923203.1 response regulator receiver BAC0638 Protein 5e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_2006 YP_923203.1 response regulator receiver VFG1389 Protein 2e-30 46
Noca_2006 YP_923203.1 response regulator receiver VFG0596 Protein 5e-24 42
Noca_2006 YP_923203.1 response regulator receiver VFG1390 Protein 3e-29 42
Noca_2006 YP_923203.1 response regulator receiver VFG1386 Protein 4e-30 41