Gene Information

Name : Noca_1613 (Noca_1613)
Accession : YP_922814.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1712465 - 1713142 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08549 response regulator, two-component system

DNA sequence : 
GTGCGGGTGTTGATGGTAGAAGACGAGGTGCGACTGGCCGAGACGGTCAGCCGCGGCCTGCGGGCCGAGGGCTTCGTCGT
CGACACGATCCATGACGGGGCCGAGGGCCTGGCCGAGGCGCAGCTCCGTGACTACGACGTGATCGTGCTGGACATCATGC
TGCCCTCGATGAACGGCTACGACGTGTGCCGTGAGCTGCGCAAGGCCGGGGTGTGGGTGCCGATCCTGATGTTGACGGCC
AAGGATGGGGAGTACGACGAGGCGGATGCCCTCGACCTGGGTGCCGACGACTACCTGACCAAACCGTTCTCCTTCGTCGT
CCTGGTCGCTCGGTTGCGAGCACTTGTCCGCCGAGGTGCCCCGAAGCGTCCATCGGTCCTGACTGTGGGTGACCTGACAC
TCGACCCCGCGACGCGGATGGTCGGCCGGGGTGGGACCGAGATCGCCTTGACGCCCCGGGAGTTCGCGCTGTTGCACTTC
TTGATGCGCCACCCAGGTGAGGTGCTGTCCAAGACCGCGATCGTGCAGAGTGTGTGGGACTTGAACTACGACGGGGACGA
GAACGTCGTCGAAGTCTATGTCGGCTACCTGCGTCGCAAGATCGACCAGCCCTTCGGCACCACCACGATCCAGACCATGC
GCGGGGCCGGCTACCGGCTGCTGGGTGACGGCGTATGA

Protein sequence : 
MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGYDVCRELRKAGVWVPILMLTA
KDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAPKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHF
LMRHPGEVLSKTAIVQSVWDLNYDGDENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRLLGDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-30 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1613 YP_922814.1 response regulator receiver BAC0125 Protein 1e-37 50
Noca_1613 YP_922814.1 response regulator receiver BAC0111 Protein 1e-34 50
Noca_1613 YP_922814.1 response regulator receiver BAC0083 Protein 3e-34 48
Noca_1613 YP_922814.1 response regulator receiver BAC0347 Protein 3e-31 47
Noca_1613 YP_922814.1 response regulator receiver BAC0308 Protein 6e-32 46
Noca_1613 YP_922814.1 response regulator receiver BAC0197 Protein 1e-35 46
Noca_1613 YP_922814.1 response regulator receiver BAC0638 Protein 2e-24 45
Noca_1613 YP_922814.1 response regulator receiver Y16952.3.orf35.gene. Protein 3e-21 44
Noca_1613 YP_922814.1 response regulator receiver U82965.2.orf14.gene. Protein 3e-19 43
Noca_1613 YP_922814.1 response regulator receiver AE000516.2.gene3505. Protein 1e-28 43
Noca_1613 YP_922814.1 response regulator receiver NC_007622.3794948.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_003923.1003417.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_013450.8614146.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_002951.3238224.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_007793.3914065.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_002758.1121390.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_010079.5776364.p0 Protein 2e-25 42
Noca_1613 YP_922814.1 response regulator receiver NC_002952.2859858.p0 Protein 2e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1613 YP_922814.1 response regulator receiver VFG1390 Protein 1e-33 45
Noca_1613 YP_922814.1 response regulator receiver VFG1386 Protein 3e-29 44
Noca_1613 YP_922814.1 response regulator receiver VFG0596 Protein 4e-31 43