Gene Information

Name : Noca_1598 (Noca_1598)
Accession : YP_922799.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1697115 - 1697795 bp
Length : 681 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system

DNA sequence : 
GTGAGGGTGCTGGTCGTCGAGGATGAGGCCAGGTTGGCCGCCTCGCTCAAGGCGGGGCTGGAGGCCGAGGGCTTCGCCGT
CGACGTAGCCGCGGACGGCGGAGAGGCGCTCTGGTATGCCGAGGAGACCAGCTACGACGTGATCCTGCTCGACGTCATGC
TGCCGGTGCTTAACGGCTACGAGGTCTGCCGGCGTCTCCGCGAGCGGGAGGTCTGGACGCCCATCCTCATGCTCACCGCT
CGAGACGAGGAGCTCGACGAGATCGAGGGTCTCGACCAGGGCGCTGATGACTATGTCACCAAGCCGTTCAGCTTCGACAT
CCTGTTAGCTCGGATCAGGTCGCTGGTGCGTCGTGGGGCCACAGAACGTCCGACCATCCTCGAGGTAGGCGATCTGCGTT
ACGACCCTGCCCGCAAGGCGGTGTCGCGGGCGGGCCAGCCCATCGACCTGACCTCGCGCGAGCTTGCGTTGATGGCCTTC
TTCATGCGCCGCGCCGGGGATGTGCTGACCAAGTTGGAGATCTTGGAGAACGTGTGGGACTTCGCCTTCGAGGGTGATCC
CAACATCGTGGAGGTTTACGTCGGACGCCTGCGACGCAAGGTGGACAAGCCGTTCGGGTGCGCCGACCTCGAGACCTTCC
GCGGGACCGGGTATCGCCTCCGGGTTCCGGAGGTCCCGTGA

Protein sequence : 
MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGYEVCRRLREREVWTPILMLTA
RDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGATERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAF
FMRRAGDVLTKLEILENVWDFAFEGDPNIVEVYVGRLRRKVDKPFGCADLETFRGTGYRLRVPEVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-36 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1598 YP_922799.1 response regulator receiver BAC0125 Protein 1e-42 47
Noca_1598 YP_922799.1 response regulator receiver BAC0638 Protein 6e-37 46
Noca_1598 YP_922799.1 response regulator receiver BAC0083 Protein 4e-43 45
Noca_1598 YP_922799.1 response regulator receiver BAC0197 Protein 3e-41 45
Noca_1598 YP_922799.1 response regulator receiver BAC0111 Protein 3e-42 44
Noca_1598 YP_922799.1 response regulator receiver BAC0347 Protein 4e-38 43
Noca_1598 YP_922799.1 response regulator receiver HE999704.1.gene1528. Protein 4e-32 42
Noca_1598 YP_922799.1 response regulator receiver AE000516.2.gene3505. Protein 2e-32 42
Noca_1598 YP_922799.1 response regulator receiver BAC0308 Protein 4e-40 41
Noca_1598 YP_922799.1 response regulator receiver NC_002516.2.879194.p Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1598 YP_922799.1 response regulator receiver VFG1386 Protein 3e-39 46
Noca_1598 YP_922799.1 response regulator receiver VFG1390 Protein 2e-38 44
Noca_1598 YP_922799.1 response regulator receiver VFG0596 Protein 6e-37 41
Noca_1598 YP_922799.1 response regulator receiver VFG1389 Protein 8e-33 41