Gene Information

Name : Noca_1592 (Noca_1592)
Accession : YP_922793.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1692054 - 1692806 bp
Length : 753 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: cef:CE2619 putative transposase

DNA sequence : 
ATGACACCCGAGGGGCTCTACGGGCGTCGGAAGATGACCGCGCTGGTGCAGCGCACGTCGCCCGAGGCATCGCCCGGCAG
CGTGGACCGGGCGATGAGAACCCTGTCCCTGCAAGGGGTTCGGCGTTCGAAGGGGATCCGGACCACGATCCCGGCCAAGG
ACGGCAAGCGAGCCGGTGACCTGCTGGATCGCGACTTCACCGCCGAAGCGCCGAACAGGACCTGGGTCATGGACTTCACC
TACGTGAGAACCTGGGCCGGGTTCGTCTACGTCGCGTTCATCCTCGACGTGTTCGCCCAGAAGATCGTCGCCTGGAACGT
CGCGCCCACCAAGGCCGTCGAGTTGGTCGACGTCCCGCTGCGAATGGCGTTGTGGCAACGCGACCGCGAGGGCCACCCGA
TCGTGCCCGGCGAACTGATCGGCCACGCCGACGCCGGATCGCAATACACCTCGATCACCTTCACCGAACACCTCGCCGAG
GAAGGCATCCGGCCCTCGATCGGGACGGTTGCCGATGCCTATGACAACGCCCTGATGGAGTGCGTGATCGGGCTCTACAA
GACCGAGTGCATCCGCACCACGGTCTTCCACGCCGGCCCCTACCGGACCATCGGCGACGTCGAGTACGCCACCGCCGGCT
GGGTCGACTGGTACAACAACAGGCGCCTGCACGGCTCGCTTGGGATGATGACCCCAGTGGAGTTCGAGCAGGCCCACTAC
GCGACTCTCAACCGAGAGCCGCAACCCGCATAG

Protein sequence : 
MTPEGLYGRRKMTALVQRTSPEASPGSVDRAMRTLSLQGVRRSKGIRTTIPAKDGKRAGDLLDRDFTAEAPNRTWVMDFT
YVRTWAGFVYVAFILDVFAQKIVAWNVAPTKAVELVDVPLRMALWQRDREGHPIVPGELIGHADAGSQYTSITFTEHLAE
EGIRPSIGTVADAYDNALMECVIGLYKTECIRTTVFHAGPYRTIGDVEYATAGWVDWYNNRRLHGSLGMMTPVEFEQAHY
ATLNREPQPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-42 47
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 6e-41 46
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-41 46
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 2e-32 45
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-42 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-42 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-43 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-43 45
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-42 44
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-42 44
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-42 44
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-42 44
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-43 44
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 6e-43 44
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-42 44
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-42 44
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-33 44
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 5e-41 43
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 5e-41 43
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 5e-41 43
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-41 43
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-41 43
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-40 43
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-28 42
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 3e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1592 YP_922793.1 integrase catalytic subunit VFG1715 Protein 8e-33 45
Noca_1592 YP_922793.1 integrase catalytic subunit VFG1602 Protein 2e-40 43