Gene Information

Name : Noca_1559 (Noca_1559)
Accession : YP_922760.1
Strain : Nocardioides sp. JS614
Genome accession: NC_008699
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1653232 - 1653918 bp
Length : 687 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: fra:Francci3_2401 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAGGATTCTGGTGGCCGAGGACGATGTCCGCCTGGCCGGCCTGCTGGAGGAGTCACTGGCCGAGGCCGGGTGGCAGGT
CGAGGTGGTGCACAACGGCCGAGTCGCCTACGACCGGCTCCTGAGCGACACCAGCTTCGATGTGGCGCTCTTGGACTGGA
TGCTGCCCGGCATGGACGGCGTCACCGTTGCCCGCCGGCTGCGCGGCCTCGGGCTGGCGCTACCGATCCTGATGTTGACC
GCCCGAGGGGACGTGCGGGACCGCATCGACGGGCTCGACGCCGGTGCCGATGACTACCTCCCCAAGCCCTTCGACCTCGA
CGAGCTGCTGGCCCGCCTCCGGGCGCTGTACCGGCGTGGTGGCCTCGGCGGCGAGGCGCCGGTGCAGATCGGTGATCTGG
TCGTGGATCCAGGGGCTCGCAGGGTCTCCCGAGGCGGCGTCGAGATCATCTTGTCCACGCGTGAGTTCGACATCCTCTAT
CTGCTGGCCTCGCACGCCGGACAGGTGGTGACCCGGTTGACGATCCTCGACGAGGTCTGGGACGGCGAGACCGACCTGCG
CAGCAATGTCATCGACGTTCACCTCGCCGCCATCCGCGGCAAGATCGACAAGCCGTTTGGCACCGACACCATCACCACGC
TGCGGGGGGTCGGCTACCGGCTCGACATCCCAGCCGGGAAACGATGA

Protein sequence : 
MRILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDGVTVARRLRGLGLALPILMLT
ARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRGGLGGEAPVQIGDLVVDPGARRVSRGGVEIILSTREFDILY
LLASHAGQVVTRLTILDEVWDGETDLRSNVIDVHLAAIRGKIDKPFGTDTITTLRGVGYRLDIPAGKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-23 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1559 YP_922760.1 response regulator receiver BAC0083 Protein 5e-26 47
Noca_1559 YP_922760.1 response regulator receiver BAC0125 Protein 9e-28 44
Noca_1559 YP_922760.1 response regulator receiver BAC0638 Protein 4e-20 43
Noca_1559 YP_922760.1 response regulator receiver BAC0197 Protein 1e-23 43
Noca_1559 YP_922760.1 response regulator receiver BAC0111 Protein 2e-28 42
Noca_1559 YP_922760.1 response regulator receiver BAC0347 Protein 4e-25 41
Noca_1559 YP_922760.1 response regulator receiver BAC0308 Protein 2e-23 41
Noca_1559 YP_922760.1 response regulator receiver Y16952.3.orf35.gene. Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noca_1559 YP_922760.1 response regulator receiver VFG1390 Protein 3e-23 46
Noca_1559 YP_922760.1 response regulator receiver VFG0596 Protein 2e-23 41
Noca_1559 YP_922760.1 response regulator receiver VFG1386 Protein 1e-16 41