Gene Information

Name : Pden_5037 (Pden_5037)
Accession : YP_918793.1
Strain :
Genome accession: NC_008688
Putative virulence/resistance : Virulence
Product : ABC transporter related
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 549321 - 549998 bp
Length : 678 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20832 cell surface polysaccharide export ABC-2 transporter ATP-binding protein

DNA sequence : 
ATGATCCGGCTCGAGAACCTGACCAAGCGCTATCGGCTCAAGGGCCGCGAGACGCTGGTGGCGGACCGGCTGAACGCCGA
GTTCCCCACCGGGGCCTCGGTGGCGCTGCTGGGCCGCAACGGCGCGGGCAAGTCGACGCTGCTCAGGATGATCGCCGGCA
CGGTCTCGCCCACGGCCGGGCGGGTGCTGTCGGACGGCACCATCTCCTGGCCGGTGGGCTTTGCCGGCAGCTTCCACCCC
GAGCTGACCGGGGCGCAGAACGTGCGCTTCGTGGCGCGCATCTACGGCGTGGATACCGACGAGCTGATCGATTACGTCGA
GGATTTCGCCGAGCTGGGCCAGCATTACCACCAGCCCTTCGGCAGCTATTCCTCGGGCATGCGCTCGCGGCTGGCGATGG
GCGCCAGCATGGGCATCCATTTCGACACCTACCTGGTCGACGAGGTGACCAGCGTCGGCGACGCCAATTTCCGCACCAAG
TCGCAGCGCGTCTTTGCCGAGCGCATGGCCCGCTCCTCCGCCATCGTGGTCAGCCATTCCATGCCGATGATCCGCAGGAT
GTGCACCATGGGCGCCGTCCTGCACCACGGCCGCCTCACCCTGTGCACCGACCTCGAGGAGGCCATCAGAATGCACGAGG
AAATCCTCAGGGTCCCACCGGACACGCAGGACGAGTGA

Protein sequence : 
MIRLENLTKRYRLKGRETLVADRLNAEFPTGASVALLGRNGAGKSTLLRMIAGTVSPTAGRVLSDGTISWPVGFAGSFHP
ELTGAQNVRFVARIYGVDTDELIDYVEDFAELGQHYHQPFGSYSSGMRSRLAMGASMGIHFDTYLVDEVTSVGDANFRTK
SQRVFAERMARSSAIVVSHSMPMIRRMCTMGAVLHHGRLTLCTDLEEAIRMHEEILRVPPDTQDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 5e-46 49
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-44 47
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_5037 YP_918793.1 ABC transporter related VFG1449 Protein 7e-45 47
Pden_5037 YP_918793.1 ABC transporter related VFG0258 Protein 6e-39 43
Pden_5037 YP_918793.1 ABC transporter related VFG2563 Protein 5e-45 42