Gene Information

Name : Pden_4874 (Pden_4874)
Accession : YP_918630.1
Strain :
Genome accession: NC_008688
Putative virulence/resistance : Resistance
Product : spermidine/putrescine ABC transporter ATPase subunit
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG3842
EC number : -
Position : 377124 - 378206 bp
Length : 1083 bp
Strand : +
Note : KEGG: mes:Meso_2369 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase

DNA sequence :
ATGAGCACTTTGGAAACGCAGGGCCTGGGCAAGGTCTATGGCGACTTCGTCGCCCTTGCACCGACCGACCTGAAGGTCGA
GAAGGGCGAGTTCCTGACGCTGCTGGGGCCGTCCGGCTCGGGCAAGACCACGCTGCTGAGCCTGATCGCCGGGCTGGCCG
AGGCCGACAGCGGGCGCATCCTGATGAACGACCGGGACGTGACCCATGCCGCGCCCTATCAGCGCGACATCGGCATGATG
TTCCAGAACTATGCGCTGTTCCCGCACATGACCATCGCCGAGAACATCGCCTTTCCGCTGAAGATGCGCGGCACGCCTGC
GGCCGAGATCAAACGGCTGGTGCAGGAGGCACTGGACATGGTGCGCCTGCCCCATATTGCGGACCGTTTCCCCAAGGAGC
TGTCCGGCGGACAGCAGCAGCGCGTGGCCCTTGCGCGCTGCACCATCTATCGCCCCTCGGTCATCCTGATGGACGAGCCG
CTGGGCGCGCTGGACAAGAAGCTGCGCGACCAGATGCAGTTCGAGATCCTGCGCATCCACAAGGAGATCGGCGGCACCAT
CGTCTATGTCACCCACGACCAGGAAGAGGCGATGACCATGTCGGACCGCATCTGCCTGATGAACGGCGGCAGGATCGCAC
AGCTGGGCAGCCCGGCCGACCTGTATTTCCGTCCGCAATCGCTGTTCGTCGCCGATTTCCTGGGCGAGGCGAACCTGCTG
GAGGGCCGCCTCGTCTCGGGCGCGGACGGCGAGGGCGTGGTGCGGCTGGGCGATGCCAGCGAGATCCGCGTCACCCTGCC
CCGGCCGCTGGACCATGGCGCGGCGGTCAAGGTCATGCTGCGGCCGCAGAACATCCGCCTTGAGGACACGCCTGGCGAGG
GGCTGAACGCCAGGCTGCGCAGCTGGAGCGTGACCGGCGCCAGCACCAAGTTCTTCCTCGACGCGCCGGCGCTGGGGTCC
GAGCCGCTGATCGCCACCCGCGCCACCGCGATGAGCCATGACGCGCCCGAGCCCGGCCGCGACTATCGCCTGAGCTTCGA
TCCGCGCGACGCCGTCGCCATCCCCGCCGACGAGGCCGCCTGA

Protein sequence :
MSTLETQGLGKVYGDFVALAPTDLKVEKGEFLTLLGPSGSGKTTLLSLIAGLAEADSGRILMNDRDVTHAAPYQRDIGMM
FQNYALFPHMTIAENIAFPLKMRGTPAAEIKRLVQEALDMVRLPHIADRFPKELSGGQQQRVALARCTIYRPSVILMDEP
LGALDKKLRDQMQFEILRIHKEIGGTIVYVTHDQEEAMTMSDRICLMNGGRIAQLGSPADLYFRPQSLFVADFLGEANLL
EGRLVSGADGEGVVRLGDASEIRVTLPRPLDHGAAVKVMLRPQNIRLEDTPGEGLNARLRSWSVTGASTKFFLDAPALGS
EPLIATRATAMSHDAPEPGRDYRLSFDPRDAVAIPADEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 9e-35 42
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_4874 YP_918630.1 spermidine/putrescine ABC transporter ATPase subunit BAC0604 Protein 5e-44 41