Gene Information

Name : Pden_4540 (Pden_4540)
Accession : YP_918299.1
Strain :
Genome accession: NC_008688
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 20858 - 21871 bp
Length : 1014 bp
Strand : +
Note : PFAM: transposase IS66; KEGG: mag:amb3320 transposase and inactivated derivative

DNA sequence :
ATGAACCGAGAGGTTCACGTACGGTTCTGGGAGCGCGTGAGGGTGAAATCCCCTCGCGCGACTCGCTTTCCGTTGTATCG
TCAGAGCCAGATCTTCGACCGCGAAGGGCTCGATCTTGACCGTTCCACGCTGGCCGACTGGGTTGGCAAGTCCACCGCCC
TGCTGGAACCCTTGGCCGAGGCCATCGGTCGCCATGTCCTGTCGGCCGAGGCGATCTTTGCCGATGACACGCCTGTCAGT
ATGCTGGCGCCCGGCACCGGCAAGACACAGACCGCGCGGCTCTGGACCTACGCCCGCGACGAACGCCCCTGGGGTGGCGA
TACCCCACCGGCCGCTTGGTATCGGTTCTCCGGCGACCGGAAAGGCCAGCACCCCAAGGATCACCTCGCCCGATACCGCG
GCTGGATGCATGCCGACGGCTATGCCGGGTTTGAGGACTTGTATCGCTCCGGTTCAATCCGCGAGGTCGCCTGCATGGCG
CATGTGCGGCGCAAGTTCGTCGACATCCACCGGTCGCAAGGCTCCCCGATCGCCGAAGAGGCCATCGGCCGGATCGCGCA
ACTCTACGCCGTCGAGAAAGAGGCCCGAGGTTCGCCACCTGATCGTCGAGCCGAGCTGCGACAAGCCCATTCCGCCCCGA
TCTTCGACAATCTGGAGCGCTGGCTCGCCCTGCAACTCACCACGGTCTCAGGCAAATCCCCGCTTGCTTCGGCCATCCGC
TATGCCCTGGCCCGCATGGAACGCATGCGCCCCTATCTCGACCACGGCATCCTCGAACTGGACAACAACGTCGCCGAACG
AGGCGTGCGTGCTGTCGCCCTCGGCCGCAAGAACTACCTCTTCGTCGGCTCCGAAGCAGGCGGCAAGGCCGCCGCCATCG
CCTATACGCTGATCGAAACGGCCAAGCTCAACGCCATTGATCCCCACGCCTGGCTCGCCGACACCCTGGCCCGCATCCCA
GACTACAAGATCACAAAGGTCGATGACCTGCTGCCTTGGAAATGGCGCGGGTAG

Protein sequence :
MNREVHVRFWERVRVKSPRATRFPLYRQSQIFDREGLDLDRSTLADWVGKSTALLEPLAEAIGRHVLSAEAIFADDTPVS
MLAPGTGKTQTARLWTYARDERPWGGDTPPAAWYRFSGDRKGQHPKDHLARYRGWMHADGYAGFEDLYRSGSIREVACMA
HVRRKFVDIHRSQGSPIAEEAIGRIAQLYAVEKEARGSPPDRRAELRQAHSAPIFDNLERWLALQLTTVSGKSPLASAIR
YALARMERMRPYLDHGILELDNNVAERGVRAVALGRKNYLFVGSEAGGKAAAIAYTLIETAKLNAIDPHAWLADTLARIP
DYKITKVDDLLPWKWRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 8e-68 49
unnamed AAK00463.1 unknown Not tested SHI-1 Protein 5e-63 46
SF2972 NP_708746.1 hypothetical protein Not tested SHI-1 Protein 3e-61 46
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 1e-52 42
RS12 AAP82957.1 transposase Not tested PAPI-2 Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_4540 YP_918299.1 transposase IS66 VFG1700 Protein 3e-68 49
Pden_4540 YP_918299.1 transposase IS66 VFG0634 Protein 1e-61 46