Gene Information

Name : Pden_3523 (Pden_3523)
Accession : YP_917289.1
Strain :
Genome accession: NC_008687
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 672138 - 673163 bp
Length : 1026 bp
Strand : +
Note : PFAM: transport system permease; KEGG: sme:SMa1745 iron uptake protein

DNA sequence : 
ATGACGGCGCGGGCCGGCGCCATGCCGGGCCGTCGGGCGGCGCGGAACACGTTGGCGCTGGCGGCGGTCGTGCTGCTGGT
GGCACTGCTTTGCGCGCTGTCGGTGGCGATCGGCACCCGCGATGTCGGCTGGGACGACATCGCCGCCGCGCTGGCCGGCC
GGGCCGAGACCATCGGCCAGGCCGCCAGCGCCGCACGGCTGCCGCGCACGGCGCTGGCCTTTCTGGCCGGAGCGGCGCTG
GGGCTTTCCGGGGCGCTGTTGCAGGGTGTCACCCGCAATCCGCTGGCCGATCCCGGCATCCTGGGCATCAACATGGGCGC
AGCGCTGGCGGTAGTAGTGGGCGTCGCCTGGTTCTCGATCACCTCGGCACAGGCCTATATCTGGGCGGCGATCCTGGGCG
CGGGGCTGACGGCGGTGTTCGTCTATGTCATCGGCTCGCTGGGCCGGGGCGGAGCGACGCCGCTGAAGCTGGCGCTGGCG
GGGGCCGCGACCTCGGTCGCCTTCGCCTCGCTGGTGATCGCGGTGGTGCTGCCGCGCGGAGACATCGCCGGGGGCATCCA
GTCCTGGCAGGTTGGCGGCGTGGGCGGGGCGACCTTCGTACGCCTGGCGCCGGTGCTGCCTTTCCTGGCCACGGGCTTCG
CGATCAGCCTGCTTTGGGCGCGCAAGCTGAACGCGCTGGCGCTTGGCGACGACCTGGCCGCCGGGCTGGGCGAGAATGTC
GCACGCACCCGCGCCATCGCCGGGCTTGGCGCCATCCTGCTGTGCGGGGCGACCACGGCGGTCTGCGGGCCCATCGGCTT
CGTCGGACTGGTGGTGCCGCATTTCTGCCGCCTGCTGGTCGGAACCGACCATCGCTGGCTGCTGCCGTTTTCGGCGCTGG
CGGGGGCGGGCTTGCTGCTGGCCTCGGACATCCTCGGCCGCATCCTGGCCCGGCCGGGCGAGCTTGACGTGGGCATCGTC
ACCGCCTTTGTCGGCGCGCCCTTCTTCATCTGGATCGTGCGCCGCCAGCGCCTGCGCGAGCTGTGA

Protein sequence : 
MTARAGAMPGRRAARNTLALAAVVLLVALLCALSVAIGTRDVGWDDIAAALAGRAETIGQAASAARLPRTALAFLAGAAL
GLSGALLQGVTRNPLADPGILGINMGAALAVVVGVAWFSITSAQAYIWAAILGAGLTAVFVYVIGSLGRGGATPLKLALA
GAATSVAFASLVIAVVLPRGDIAGGIQSWQVGGVGGATFVRLAPVLPFLATGFAISLLWARKLNALALGDDLAAGLGENV
ARTRAIAGLGAILLCGATTAVCGPIGFVGLVVPHFCRLLVGTDHRWLLPFSALAGAGLLLASDILGRILARPGELDVGIV
TAFVGAPFFIWIVRRQRLREL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 5e-38 45
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 4e-38 45
fecD AAL08452.1 FecD Virulence SRL Protein 4e-15 42
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 3e-12 42
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 3e-12 42
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 3e-12 42
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 3e-12 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_3523 YP_917289.1 transport system permease BAC0163 Protein 3e-15 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_3523 YP_917289.1 transport system permease VFG0926 Protein 2e-30 49
Pden_3523 YP_917289.1 transport system permease VFG1043 Protein 2e-15 42
Pden_3523 YP_917289.1 transport system permease VFG0922 Protein 2e-15 41