Gene Information

Name : Pden_3162 (Pden_3162)
Accession : YP_916939.1
Strain :
Genome accession: NC_008687
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 336263 - 337168 bp
Length : 906 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2120 integrase, catalytic region

DNA sequence : 
ATGGTGGGTTTCATCGACGCGCATCGGGATGCGCACGGGGTCGAGCCGATCTGCGACGTTCTGCCGATCGCCCCTGCCAC
CTATTATGACCATCTGGCCAAACGTGCCGACCCGGCGCGGTTGTCGGATCGTGCCAAACGGGACGAGGCGCTGCGCCCCG
AGATACGGCGTGTTTTCGAGGACAACTGGAGCGTCTACGGCCTGCGCAAGGTCTGGCACCAGCTGCGCCGCGAGGGCTTC
GATATCGCTTGCTGCACGGTGGCACGGCTGATGAAGGACATGGGCATTCAAGGCATTGTCCGGGGCAAGCCGCACAAGAC
GACGATCCCTGACAAGAAGCAGCCATGCCCGCTGGACAAGGTGAACCGCCAGTTCCGCGTGCCTGCGCCGAACATGCTGT
GGGTCAGCGATTTCACCTATGTTGCCACCTGGAAGGGGTTTGTTTATGTCGCTTTCGTCATCGACGCTTATGCCCGCAAG
ATTGTCGGCTGGCGGGTCAGCACCTCGGCGTATGCCGGGTTCGTCCTTGATGCCCTCGAACAGGCGGTCCATGACCGCCG
CCCGGTCAAGGGCATGGGGCTGGTTCACCACAGCGACCGCGGCAGCCAGTATCTGTCGATCAAATACACTGAACGGCTGG
CCGAGGCGGGCATCGAGCCTTCGGTTGGCAGCGTCGGTGACAGCTACGACAACGCGCTGGCCGAGACGATCAACGGGCTC
TTCAAGGCCGAGGTCATCCACCGTCGGGGGCCCTGGCGCAGCTTCGAGGCCGTGGAATACGCAACCCTCGAATGGGTGGA
CTGGTTCAACAACCGCCGCCTGCTCGAGCCGATCGGGAACATCCCGCCCGCCGAAGCCGAGGCAAACTTCTACGCGGCTC
TGGAAACTGAAGCCATGGCCGCGTAA

Protein sequence : 
MVGFIDAHRDAHGVEPICDVLPIAPATYYDHLAKRADPARLSDRAKRDEALRPEIRRVFEDNWSVYGLRKVWHQLRREGF
DIACCTVARLMKDMGIQGIVRGKPHKTTIPDKKQPCPLDKVNRQFRVPAPNMLWVSDFTYVATWKGFVYVAFVIDAYARK
IVGWRVSTSAYAGFVLDALEQAVHDRRPVKGMGLVHHSDRGSQYLSIKYTERLAEAGIEPSVGSVGDSYDNALAETINGL
FKAEVIHRRGPWRSFEAVEYATLEWVDWFNNRRLLEPIGNIPPAEAEANFYAALETEAMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-59 62
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 2e-56 61
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-58 61
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-68 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-79 58
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-79 58
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-75 57
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-76 57
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-76 57
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-76 57
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-76 57
Z1198 NP_286733.1 transposase Not tested TAI Protein 8e-78 57
Z1638 NP_287141.1 transposase Not tested TAI Protein 8e-78 57
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-78 57
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 57
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 57
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-77 57
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-77 57
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-77 57
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-77 57
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-54 56
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-75 55
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-56 50
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-43 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_3162 YP_916939.1 integrase catalytic subunit VFG1602 Protein 1e-75 55