Gene Information

Name : Pden_3846 (Pden_3846)
Accession : YP_917608.1
Strain :
Genome accession: NC_008687
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 980135 - 981040 bp
Length : 906 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: nwi:Nwi_2120 integrase, catalytic region

DNA sequence : 
ATGGTGGGTTTCATCGACGCGCACCGGGATGCGCACGGGGTCGAGCCGATCTGCGACGTGCTGCCGATCGCCCCGTCCAC
CTATTATGATCACCTTGCGAAGCGGGCCGATCCGTCTCGGCTGTCGGATCGGGCACGTCGGGACGAAGCGCTGCGCCCCG
AGATCCTGCGCGTGTTCGAAGAGAACTGGCGGGTCTATGGTGTCCGGAAGGTCTGGCGACAGCTTGGCCGTGAGGGCTTC
GATGTCGCGCGATGCACGGTGGCACGGCTGATGAAGAGCATGGGTATTCAGGGCATTATCCGCGGCAAGCCGCACAGGAC
GACGATCCCGGACAAGAAAGCTCCCTGTCCGCTGGACAAGGTGAACCGCCAGTTCCGCGTTCCGGCCCCGAACATGCTGT
GGGTGTCGGATTTCACCTATGTCGCCACCTGGAAGGGTTTCGTCTATGTCGCCTTTGTCATCGATGCCTATGCTCGCAAG
ATCGTTGGCTGGCGCGTCAGCAGTTCGGCGCATGCGGGGTTCGTTCTCGATGCCCTAGAGCAGGCGGTGCATGATCGCCG
CCCGGGAAAGGGCATGGGGCTGGTTCACCACAGCGACAGGGGCTCGCAATACCTGTCTATTCGCTACACTGAGCGCTTGG
CGGAGGCCGGTATCGAACCCTCGGTGGGCAGCGTCGGCGACAGTTACGACAACGCCTTGGCCGAGACGATCAATGGCCTG
TTCAAGGCGGAGGTCATCCACCGCCGTGGCCCATGGCGCAGCTTGGAAGCCGTGGAATACGCGACGCTCGAATGGGTGGA
CTGGTTCAACAACCGCCGTCTTCTCGAGCCCATAGGGAACATCCCGCCCGCAGAAGCCGAGGCCAACTTCTATGCAGCTC
TGGAAACTGAAGCCATGGCTGCGTAA

Protein sequence : 
MVGFIDAHRDAHGVEPICDVLPIAPSTYYDHLAKRADPSRLSDRARRDEALRPEILRVFEENWRVYGVRKVWRQLGREGF
DVARCTVARLMKSMGIQGIIRGKPHRTTIPDKKAPCPLDKVNRQFRVPAPNMLWVSDFTYVATWKGFVYVAFVIDAYARK
IVGWRVSSSAHAGFVLDALEQAVHDRRPGKGMGLVHHSDRGSQYLSIRYTERLAEAGIEPSVGSVGDSYDNALAETINGL
FKAEVIHRRGPWRSLEAVEYATLEWVDWFNNRRLLEPIGNIPPAEAEANFYAALETEAMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-62 64
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-71 64
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-58 63
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-61 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-82 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 5e-83 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 5e-79 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-80 60
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-80 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-80 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-80 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-81 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-81 60
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-82 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-82 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-82 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-81 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-81 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-58 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-81 59
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-80 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-78 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-56 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-41 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_3846 YP_917608.1 integrase catalytic subunit VFG1602 Protein 6e-79 58