Gene Information

Name : Pden_2109 (Pden_2109)
Accession : YP_915897.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2112344 - 2113678 bp
Length : 1335 bp
Strand : -
Note : KEGG: rsp:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase

DNA sequence :
ATGCAATCTATCGCGGCGCGGATGCGGCGGGTCCGCATGACCCGGCATTTCGGGCAGGTCAGCGCGATCCAGGCGGGGGT
GATCTTGGCAGGGGGCCTGAACAGCCATGCGTCGTTGGGGGATCGCGTCGTCTTTTCAATGCGCTCCGGGCAAGTGCTGA
ATGGAGAGATCGTCGCGCTGCATTCCGATCAGGCGGTGATCCTGCCCGAAGGTCCGATGGACGGGCTGTCGATCAGCACG
CGGGTCGAGCTGGTCTTTGCGCCCATGCTCGCGCCGGCGAATGCCTGGATCGGGCGAATCATCGATCCTTTCGGCAGGCC
GCTCGACGGCCGTCCCCTGGTCGCGGGCGGCGAGGAGCGCGGCTTTCGCCCACCGCCGCCGCCCGCTGCGTCGCGCAACC
GGCTGGGCGGGCGGCTGGATACGGGGCTGGCGGTCTTCGACACGCTTCTGCCGCTGGTGCGGGGGCAGCGGATGGGGCTG
TTTGCGGGCTCGGGCGTGGGCAAGTCGACGCTGCTTTCGATGCTGGCCAAGGGGGTTCCGGCCGATGTGGTGGTGATCGC
GCTGGTCGGCGAGCGCGGGCGCGAATTGCGCGAATTCGTCGAGGAAACGCTGGGCGAGGAGGGGATGGCGCGCTCGGTCG
TGGTGGCGGCGACCTCGGACCAGCCGCCCTTGATGCGCCGGCGCTGCGCCTGGGCGGCGATGACGGTGGCCGAGCATTTC
CGCGACCAGGGCCGGCATGTGCTGTTCCTGGCCGATTCAATCACCCGCTTTGCCGAGGCGCATCGGGAGATCGCGCTGGC
GGCGGGGGAAAGTCCCAGTTATCGCGGCTTTCCGCCCTCGACCTCGCATCTGATCATGTCGCTGGCCGAGCGCTCGGGGC
CGGGACCGGCGGGGGCGGGGGACATCACCGCGATCTTCAGCGTGCTGGTCGCGGGCTCGGACATGGAAGAGCCGGTGGCC
GACATCCTGCGCGGCGTGCTGGACGGCCATGTCGTGCTGGACCGTGCCATCGCCGAGCGCGGGCGGTTTCCGGCGGTGGA
CGTGCTGCGCTCGGTCTCGCGCTCGTTGCCGCAGGCGGCCAGTGCGGACGAGAATGCGCTGATCGCCCGGGCGCGGGCGA
CGCTCGGCACCTATGCCGAATCCGAACTGATGATCCGCGCCGGGCTTTATGCGCCGGGCTCGGACCCCGCGCTGGACGAG
GCGGTGCGGCTTTACCCGGCGCTGGACGCCTTCTTCACCCGCCGGGGCGGCGATGCCCGCCAAAGCTTCGCGTTGCTGGC
CGAAGCGCTGGGGGTGCCTCCACCAATCTCCGCTTGCGGTGAAAGAACCCTATGA

Protein sequence :
MQSIAARMRRVRMTRHFGQVSAIQAGVILAGGLNSHASLGDRVVFSMRSGQVLNGEIVALHSDQAVILPEGPMDGLSIST
RVELVFAPMLAPANAWIGRIIDPFGRPLDGRPLVAGGEERGFRPPPPPAASRNRLGGRLDTGLAVFDTLLPLVRGQRMGL
FAGSGVGKSTLLSMLAKGVPADVVVIALVGERGRELREFVEETLGEEGMARSVVVAATSDQPPLMRRRCAWAAMTVAEHF
RDQGRHVLFLADSITRFAEAHREIALAAGESPSYRGFPPSTSHLIMSLAERSGPGPAGAGDITAIFSVLVAGSDMEEPVA
DILRGVLDGHVVLDRAIAERGRFPAVDVLRSVSRSLPQAASADENALIARARATLGTYAESELMIRAGLYAPGSDPALDE
AVRLYPALDAFFTRRGGDARQSFALLAEALGVPPPISACGERTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-60 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-61 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 9e-61 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-61 44
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-61 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-61 44
lscN AAO18044.1 LscN Virulence TTSS locus Protein 6e-60 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-62 42
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-62 41
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-62 41
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-55 41
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-56 41
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-62 41
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 6e-63 41
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-62 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 7e-58 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 6e-58 41
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-63 41
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-63 41
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG0515 Protein 7e-62 44
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG0192 Protein 8e-61 44
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG0048 Protein 4e-67 44
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG0390 Protein 5e-61 44
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG1254 Protein 2e-65 42
Pden_2109 YP_915897.1 FliI/YscN family ATPase VFG2499 Protein 3e-68 42