Gene Information

Name : Pden_1259 (Pden_1259)
Accession : YP_915060.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1221618 - 1222523 bp
Length : 906 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA

DNA sequence : 
ATGAAGCGCAGAACATTCCTGACCGCCGCCCTTGCCGGGCTTGCCGCCCCCGCCATCGTCCCCGGGCCTGCCCGGGCGCA
GGCGGGCAAGCTCAAGGTGGCGACCACCTTCACCATCATCGCCGACATGGCGCGCAACGTGGCGGGCGACCGGGCCGAGG
TGGTCTCGATCACCAAGCCCGGGGCCGAGATCCACAATTACGAGCCGACGCCCAGCGACCTGATCGGCGCGCGCGACGCT
GGCCTGATCCTGCGCAACGGGCTGAACCTGGAACTGTGGTTCGAGCAGTTCCTGCGCAACCTGGGCGACCTGCCCTCGGC
CACGCTGACCGATGGGATCGAGCCGATGCCGATCTCGGGCGGGCATTACGACGGCAAGCCCAACCCCCATGCCTGGATGG
CGCTGGATACGGCGCTGGTCTATGTGGACAATATCGCCGCCGCCCTGTCCAAGGCCGATCCCCAGGGCACCGGCAGCTAT
CGCGCCAATGCCGGCCGCTACAAGGGCGAGATCGCGCGGACCATCGGCCCGCTGCGCGACGCCGCCCGCGCCCTGCCCGA
AGAACGGCGCTGGCTGGTGACCTCGGAAGGGGCGTTTTCCTATCTGGCGCGGGATTTCGGCCTGCGCGAACTGTTCCTGT
GGCCGATCAACGCCGATGCGCAGGGCACCCCCCAGCAGGTGCGGCGCGTGGTCGATGCCATCAGGCAGCACGACATTCCG
GTGGTGTTTTCGGAAAGCACCGTCTCGGACCGGCCGGCCAGGCAGATCGCGGCCGAGACCGGGGCGCGCTATGGCGGCGT
GCTTTACGTCGACAGCCTGTCCGAGCCGGACGGGCCGGTGCCGACCTATCTGGACCTGCTGCGCGTGACTTCGGAAACCA
TCGTCAGGGGGCTTTCCGATGCCTGA

Protein sequence : 
MKRRTFLTAALAGLAAPAIVPGPARAQAGKLKVATTFTIIADMARNVAGDRAEVVSITKPGAEIHNYEPTPSDLIGARDA
GLILRNGLNLELWFEQFLRNLGDLPSATLTDGIEPMPISGGHYDGKPNPHAWMALDTALVYVDNIAAALSKADPQGTGSY
RANAGRYKGEIARTIGPLRDAARALPEERRWLVTSEGAFSYLARDFGLRELFLWPINADAQGTPQQVRRVVDAIRQHDIP
VVFSESTVSDRPARQIAAETGARYGGVLYVDSLSEPDGPVPTYLDLLRVTSETIVRGLSDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-87 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-87 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-87 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-87 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-87 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1259 YP_915060.1 periplasmic solute binding protein BAC0349 Protein 6e-88 64
Pden_1259 YP_915060.1 periplasmic solute binding protein BAC0439 Protein 2e-79 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1259 YP_915060.1 periplasmic solute binding protein VFG0525 Protein 6e-88 64