Gene Information

Name : Pden_1258 (Pden_1258)
Accession : YP_915059.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1220756 - 1221625 bp
Length : 870 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02508 iron transport ATP-binding ABC transporter protein

DNA sequence : 
ATGCCTGACGCCCCCGGCATCGAGGTCTCCGGCCTGACGGTGGCCTATCGCAACGGCTTCACGGCGCTGCGGGATGCAAG
CTTCACCGTGCCGCAAGCCTCGGTCACGGCGCTGGTGGGGGTGAACGGTTCGGGGAAATCCACGCTGTTCAAGGCGCTGA
TGGGTTTCGTTCCGGCCGCCGCCGGCAAGGTGCGGGTGCTGGGCATGACCGTGCCGCAGGCGCTGCGCCGCAACCTGATC
GCCTATGTCCCGCAGGCCGAGGAGGTGGACTGGACCTTTCCGGTGCTGGTCGAGGACGTGGTGATGATGGGCCGCTATGG
CCATATGGGCTTTCTGCGCCGCGCGCGGCCCGAGGACCGCCGCGCCGTGGACGAGGCGCTGGCCCGCGTGAACATGCAGG
ACTTCCGCCACCGCCAGATCGGCGAGCTTTCGGGCGGCCAGAAAAAGCGCGTCTTCCTGGCGCGGGCGCTGGCGCAAGGC
GCCTCGGTGATCCTGCTCGACGAGCCCTTTACCGGCGTGGACGTCAAGACCGAATCCGCGATCATCAAGCTGTTGCAGCA
GATGCGGGACGAGGGCCGGGTCATGCTGGTCTCGACCCATGACCTCGGTTCGGTGCCGGAATATTGCGACCGGGTGGTGC
TGGTGAAGAACACCGTGCTGGCCCATGGCCCGACGGCCGAGGTCTTTACGCCCGAGAACCTGCGCCTGGCCTTTGGCGGC
GTGCTGCGCCATTTCGTGCTGGGCGCGCGGCATCTGCATGCGGACGACGATCCGCGCGCGCTGACCGTGCTGTCGGACGA
CGAGCGCCCGCTGGTCTTTTACGACGACAAGCAGCGCAGCGCCCGCGAAGAAGAGGCGGCGCCGAAATGA

Protein sequence : 
MPDAPGIEVSGLTVAYRNGFTALRDASFTVPQASVTALVGVNGSGKSTLFKALMGFVPAAAGKVRVLGMTVPQALRRNLI
AYVPQAEEVDWTFPVLVEDVVMMGRYGHMGFLRRARPEDRRAVDEALARVNMQDFRHRQIGELSGGQKKRVFLARALAQG
ASVILLDEPFTGVDVKTESAIIKLLQQMRDEGRVMLVSTHDLGSVPEYCDRVVLVKNTVLAHGPTAEVFTPENLRLAFGG
VLRHFVLGARHLHADDDPRALTVLSDDERPLVFYDDKQRSAREEEAAPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-86 67
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-86 67
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-87 67
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-87 67
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-86 67
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 4e-43 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 6e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1258 YP_915059.1 ABC transporter BAC0350 Protein 7e-87 67
Pden_1258 YP_915059.1 ABC transporter BAC0440 Protein 6e-87 60
Pden_1258 YP_915059.1 ABC transporter BAC0400 Protein 2e-48 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1258 YP_915059.1 ABC transporter VFG0526 Protein 7e-87 67