Gene Information

Name : Pden_1257 (Pden_1257)
Accession : YP_915058.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1219899 - 1220759 bp
Length : 861 bp
Strand : -
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02507 iron transport system membrane ABC transporter protein

DNA sequence :
ATGATCCGCACGCTGCTTGTCCCCTTTGAATACAGCTACATGACCGACGCGATCTGGGTCTCGGCGCTGGTCGGCGGGGT
CTGCGCCTTCCTGTCGGCCTATCTGATGCTCAAGGGCTGGTCGCTGATCGGCGACGCGCTGAGCCATTCCATCGTGCCGG
GCGTCGCCGGCGCCTATATGCTGGGCCTGCCCTTCGCGCTGGGGGCGTTCCTGTCGGGCGGGCTGGCCGCGCTGACCATG
CTGTTCCTGAACAAGCGCACGGGCCTGCGCGAGGACGCGATCATCGGCCTGATCTTCACCGGCTTCTTCGGGCTGGGGCT
GTTCATGGTCTCGCTCAACCCGATGGCGGTCAGCGTGCAGACCATCACCATGGGCAACATCCTGGCGATCACGCCGGGCG
ACACGCTGCAACTGGCGCTGATCGGCGGCATCTCGCTGCTGATCCTGGCGGCGAAATGGCGCGACCTGATGGTGGTGTTC
TTCGACGAAAGCCATGCCCGCACCATCGGACTGAACCCGCAGGCGCTGAAGGTGCTGTTCTTCACCCTGCTTTCGGCCTG
CACGGTCGCGGCGATGCAGACCGTCGGCGCCTTCCTGGTCGTTGCGCTGGTGGTGACGCCGGGCGCCACCGCCTATCTGC
TGACCGACCGCTTTCCGCGGCTGATCCTGATCTCGGTGGCGATCGGCTCGCTCACCTCGGCGCTTGGCGCCTATGTCTCG
TTCTTCCTCGACGGTGCGACCGGGGGGGTGATCGTCTGCCTGCAGACCGCGATCTTCCTGGCCGTCTTCCTGCTGGCACC
GAAGCACGGGCTTTTCGCCGCCCGCCGCCGCGCCCGCGCCGCATTGAAGGAGGCCGCGTGA

Protein sequence :
MIRTLLVPFEYSYMTDAIWVSALVGGVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAALTM
LFLNKRTGLREDAIIGLIFTGFFGLGLFMVSLNPMAVSVQTITMGNILAITPGDTLQLALIGGISLLILAAKWRDLMVVF
FDESHARTIGLNPQALKVLFFTLLSACTVAAMQTVGAFLVVALVVTPGATAYLLTDRFPRLILISVAIGSLTSALGAYVS
FFLDGATGGVIVCLQTAIFLAVFLLAPKHGLFAARRRARAALKEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-68 75
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-68 75
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-68 75
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-68 75
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-68 75

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1257 YP_915058.1 ABC-3 protein BAC0351 Protein 1e-68 75
Pden_1257 YP_915058.1 ABC-3 protein BAC0441 Protein 6e-63 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1257 YP_915058.1 ABC-3 protein VFG0527 Protein 1e-68 75