Gene Information

Name : Pden_1256 (Pden_1256)
Accession : YP_915057.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1219069 - 1219899 bp
Length : 831 bp
Strand : -
Note : PFAM: ABC-3 protein; KEGG: rsp:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD

DNA sequence : 
ATGGACTGGCTGACGATGCCGCTTGCCTTTCCCTTCATGCGCGATGCGGCGCTGATCGGGCTGATGATCGCCCTGCCCGC
CGGGCTTCTGTCCTGCTTCCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGACGCGGTCAGCCATGCCGTGCTGCCCGGCG
TGGTGCTGGCCTATGTCGCGGGCCTGCCGCTGATCCTGGGCGCCTTTCTTGCCGGCATAAGCTGCGCGGCCCTGACCGGC
TGGTTGCAGGACAACAGCCGCGTCAAGGCCGATACCGTGCTGGGCGTGGTCATGTCGGGCATGTTCGGGCTGGGAGTGGT
GCTTTACACCGCCATCCAGACCGACCTGCACCTGGACCATATCCTGTTCGGCAACATGCTGGGCGTCGGGCCGGAGGACT
TGCGCCTCGCGGGCAGCATCTCGGCGCTGGTCGGGCTGGCGCTGATCCTGAAATGGCGCGACTTCGCGCTCCTGGCCTTC
GACCCGGTACAGGCGCGGGTCTCGGGGCTGGCGCTGGCCGTGCTGAACTACGGGCTGCTGGCCATGATCTCGGCCACGGT
CGTCGCCATGCTCAGTTCCGTCGGCATCATCCTGGCGGTTGCGCTGCTGATCGCGCCGGGGGCGGTGGCCTTTCTGGTCA
CGCGGCGGCTGCCAGTGATGCTGGCCACATCGGTCGCAGTCGCGGCATTCGCCGCGGTCAGCGGGGTCTGGGCCAGCTTC
TGGCTGAACAGCGCGCCCGCGCCGACCATCGTGCTGGTGCTGACGGCGCTGTTCGTGCTGGCCTTCCTGTGGCGCAACAT
CGCCACGCGGCGGGCGCAGGGGGCGGACTAG

Protein sequence : 
MDWLTMPLAFPFMRDAALIGLMIALPAGLLSCFLVLKGWSLMGDAVSHAVLPGVVLAYVAGLPLILGAFLAGISCAALTG
WLQDNSRVKADTVLGVVMSGMFGLGVVLYTAIQTDLHLDHILFGNMLGVGPEDLRLAGSISALVGLALILKWRDFALLAF
DPVQARVSGLALAVLNYGLLAMISATVVAMLSSVGIILAVALLIAPGAVAFLVTRRLPVMLATSVAVAAFAAVSGVWASF
WLNSAPAPTIVLVLTALFVLAFLWRNIATRRAQGAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-60 58
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-59 58
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-60 58
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-60 58
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-60 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1256 YP_915057.1 ABC-3 protein BAC0352 Protein 4e-60 58
Pden_1256 YP_915057.1 ABC-3 protein BAC0442 Protein 1e-55 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_1256 YP_915057.1 ABC-3 protein VFG0528 Protein 4e-60 58