Gene Information

Name : Pden_0116 (Pden_0116)
Accession : YP_913929.1
Strain :
Genome accession: NC_008686
Putative virulence/resistance : Resistance
Product : hexapaptide repeat-containing transferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 108141 - 108776 bp
Length : 636 bp
Strand : -
Note : PFAM: transferase hexapeptide repeat containing protein; KEGG: atc:AGR_L_286 chloramphenicol acetyltransferase

DNA sequence : 
ATGGACAATTATTTCGAAAGCCCGTTCCGGGGCATCACCCTCGACCAGCAGGTCACCAATCCTAACATCGTGGTCGGCCG
CTACAGCTATTATTCCGGCTATTACCACGGCCACGGCTTCGACGATTGCGCCCGATACCTGCTGCCCGACGAGGGCGCGG
ACCGGCTGATCATCGGCAGTTTCTGCTCGATCGGCTCGGGCGCGGGTTTCATCATGGCGGGCAATCAGGGCCACCGGAAC
GACTGGATCAGTAGCTTCCCCTTCTACTGGATGCCCGAAGTGCCCGCCTTCGCCGGCGCCGCGAACGGCTATCAGCCTGT
GGGCGACACCGTGATCGGCAGCGATGTTTGGATCGGCTCCGAGGCGGTCATCATGCCCGGTATCCGGATCGGCGACGGCG
CGGTGATCGGCACCCGCGCGCTGGTGACGCGCGACGTGGAACCCTACGCCATTGTCGGCGGCAACCCCGCGAAGGTGATC
CGCAAGCGTTTCGACGACCGGCAGATAGGGCTGCTGCTGGAGATGCGCTGGTGGGACTGGTCCGACGAACAGTTGCACGC
CGCCATACCCTTGCTGACCAGCGGCGAGGTCGAGGGGCTGCACAGGTATTGGCTGGAAAAGATCCGGGCCGCATGA

Protein sequence : 
MDNYFESPFRGITLDQQVTNPNIVVGRYSYYSGYYHGHGFDDCARYLLPDEGADRLIIGSFCSIGSGAGFIMAGNQGHRN
DWISSFPFYWMPEVPAFAGAANGYQPVGDTVIGSDVWIGSEAVIMPGIRIGDGAVIGTRALVTRDVEPYAIVGGNPAKVI
RKRFDDRQIGLLLEMRWWDWSDEQLHAAIPLLTSGEVEGLHRYWLEKIRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 2e-65 72
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 2e-65 72
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 3e-64 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase AF322577.2.gene4.p01 Protein 8e-66 72
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase AY740681.1.gene5.p01 Protein 8e-66 72
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase AY123251.gene2.p01 Protein 1e-64 71
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase NC_002516.2.878374.p Protein 4e-63 70
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase JF268688.1.gene6.p01 Protein 2e-59 65
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase AM180355.1.gene2499. Protein 1e-31 46
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase CP001581.1.gene990.p Protein 2e-38 44
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase NC_010410.6000796.p0 Protein 3e-27 42
Pden_0116 YP_913929.1 hexapaptide repeat-containing transferase NC_011595.7057349.p0 Protein 3e-27 42