Gene Information

Name : Cpha266_2347 (Cpha266_2347)
Accession : YP_912759.1
Strain : Chlorobium phaeobacteroides DSM 266
Genome accession: NC_008639
Putative virulence/resistance : Virulence
Product : polysaccharide export protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1596
EC number : -
Position : 2722785 - 2723876 bp
Length : 1092 bp
Strand : -
Note : PFAM: polysaccharide export protein; KEGG: bte:BTH_I1327 WcbC

DNA sequence : 
ATGCTTCCCGGATCAGGTCCGAAAACAGGATCGGTAATGGATGCGGATCGTTCAGAACGGCTCAGGAATATCAAGGTTAT
TGATCTCAGCCAGCAGGTCGTTACCCAACTGGCACAGGCGCAACAGCAGTTGTTGTTTTCGGAGGTATTTAACACGGTAC
AGCAGCCCAATCTGTTAATAGGTGCGGGTGACATTCTCGAAGTCTCGATCTGGGAGGTGCCTCCGGCACTGTTCAGCGGC
GTTTTCATCGATCAACGTTCCGGGGCAGGTGCAACCCAGAAAATAACCTTTCCTGAGCAGATGGTAACGCAGGACGGTAC
CATCAACATACCGTTTGCCGGTCATATACCGGTAACCGGCAAGACGACGCGGCAGATAGAGTCCGTCATCACCGGAAGGT
TGAACGGCAAAGCGAATCAACCTCAAGTGCTGGTTCGCACCGTACGCAATAATACAGCCAATGTGACAGTCGTCGGAGAG
GTCGCCTCAAGCACCCGTATGCCTTTGACCAGTCGAACCGAGAGACTGCTCGATGCTCTTGCCGCAGCGGGCGGGGTAAG
GCAGCCCGTCAGTAAAATGACGCTGCAGCTCACCCGAGGCAAAACCGTTCAGGCTATGCCGCTCGATCACATAATCCGCG
ACCCTCTTCAGAATGTCGTATTACAGTCGGATGACGTTGTTACCCTTATGCATCAACCGCTCAGTTTTACCGCATTCGGT
GCGACGGGAAAAAACGAAGAGGTGAATTTTGAAGCACAGGGAATCTCCCTTGCCCAGGCGCTTGCAAGGGTTGGAGGAAT
ACAGGACAACCGGGCCGATGCTAAAGGGGTATTTGTCTTTCGTTTCGGGCAGAAAGCTGAAGAAGGCCTGACCGCCGGTA
TGCCGGGAGCTTCGTCACTATATAAGCAACCGGTTATCTACAGCGTGAACCTCAGAGATCCCGCATCTTTTTTTCTTGCA
CAAAACTTCATGATGCAGAACAAGGATATTCTCTACGTTTCCAATGCGCCGTCATCTGATCTCCAGAAATTTCTGAATAT
GGTCGTTTCCGTGGTTTATCCTATTGTCAATATTTCAAATGCGGTGCAGTAA

Protein sequence : 
MLPGSGPKTGSVMDADRSERLRNIKVIDLSQQVVTQLAQAQQQLLFSEVFNTVQQPNLLIGAGDILEVSIWEVPPALFSG
VFIDQRSGAGATQKITFPEQMVTQDGTINIPFAGHIPVTGKTTRQIESVITGRLNGKANQPQVLVRTVRNNTANVTVVGE
VASSTRMPLTSRTERLLDALAAAGGVRQPVSKMTLQLTRGKTVQAMPLDHIIRDPLQNVVLQSDDVVTLMHQPLSFTAFG
ATGKNEEVNFEAQGISLAQALARVGGIQDNRADAKGVFVFRFGQKAEEGLTAGMPGASSLYKQPVIYSVNLRDPASFFLA
QNFMMQNKDILYVSNAPSSDLQKFLNMVVSVVYPIVNISNAVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrA NP_273135.1 capsule polysaccharide export outer membrane protein Not tested IHT-A Protein 2e-53 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpha266_2347 YP_912759.1 polysaccharide export protein VFG2566 Protein 2e-74 54
Cpha266_2347 YP_912759.1 polysaccharide export protein VFG0699 Protein 4e-59 42
Cpha266_2347 YP_912759.1 polysaccharide export protein VFG0687 Protein 4e-59 42
Cpha266_2347 YP_912759.1 polysaccharide export protein VFG0255 Protein 1e-53 41